Browsing by Author Yang, Pengyi

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Issue DateTitleAuthor(s)Citation
2009An Agent-Based Hybrid System for Microarray Data AnalysisYang, Pengyi; Wu, Xingdong; Zhang, Chengqi; Zhang, Zili; Schl Information TechnologiesAn Agent-Based Hybrid System for Microarray Data Analysis, IEEE Intelligent Systems, vol.24, 5,pp 53-63
2010A clustering based hybrid system for biomarker selection and sample classification of mass spectrometry dataYang, Pengyi; Zhou, Bing; Zomaya, Albert; Zhang, Zili; Schl Information Technologies; Schl Information Technologies; Schl Information TechnologiesA clustering based hybrid system for biomarker selection and sample classification of mass spectrometry data, Neurocomputing, vol.73, 13-15,pp 2317-2331
2014Direction pathway analysis of large-scale proteomics data reveals novel features of the insulin action pathwayPatrick, Ellis; Yang, Jean Yee Hwa; Yang, Pengyi; Burchfield, James; Fazakerley, Daniel; Gribben, Christopher; James, David; Prior, Matthew; Tan, Shi-Xiong; Mathematics & Statistics; Mathematics & Statistics; Schl Information TechnologiesDirection pathway analysis of large-scale proteomics data reveals novel features of the insulin action pathway, Bioinformatics, vol.30, 6, 2014,pp 808-814
2013Dynamic adipocyte phosphoproteome reveals that akt directly regulates mTORC2Yang, Pengyi; Yang, Yee (Jean); Fazakerley, Daniel; Humphrey, Sean; James, David; Stockli, Jacqueline; Yang, Guang; Schl Information Technologies; Mathematics & StatisticsDynamic adipocyte phosphoproteome reveals that akt directly regulates mTORC2, Cell Metabolism, vol.17, 6, 2013,pp 1009-1020
2010A dynamic wavelet-based algorithm for pre-processing tandem mass spectrometry dataArthur, Jonathan; Wang, Penghao; Yang, Jean Yee Hwa; Yang, Pengyi; Childrens Medical Research Institute (CMRI); Mathematics & Statistics; Mathematics & Statistics; Mathematics & StatisticsA dynamic wavelet-based algorithm for pre-processing tandem mass spectrometry data, Bioinformatics, vol.26, 18, 2010,pp 2242-2249
2013Ensemble-Based Wrapper Methods for Feature Selection and Class Imbalance LearningChawla, Sanjay; Yang, Pengyi; Zhou, Bing; Zomaya, Albert; Liu, Wei; Schl Information Technologies; Schl Information Technologies; Schl Information Technologies; Schl Information TechnologiesEnsemble-Based Wrapper Methods for Feature Selection and Class Imbalance Learning, Proceedings of the 17th Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD), vol.7818, 2013, pp. 544-555
2011Gene-gene interaction filtering with ensemble of filtersHo, Joshua; Yang, Pengyi; Yang, Yee (Jean); Zhou, Bing; Schl Information Technologies; Schl Information Technologies; Mathematics & Statistics; Schl Information TechnologiesGene-gene interaction filtering with ensemble of filters, BMC Bioinformatics, vol.12, Supp 1: S10, 2011,pp 1-10
2010A genetic ensemble approach for gene-gene interaction identificationHo, Joshua; Yang, Pengyi; Zhou, Bing; Zomaya, Albert; Schl Information Technologies; Schl Information Technologies; Schl Information Technologies; Schl Information TechnologiesA genetic ensemble approach for gene-gene interaction identification, BMC Bioinformatics, vol.11, 524,pp 1-15
2015Global Phosphoproteomic Analysis of Human Skeletal Muscle Reveals a Network of Exercise-Regulated Kinases and AMPK SubstratesBurchfield, James; Chaudhuri, Rima; Fazakerley, Daniel; Hoffman, Nolan; Holliday, Mira; James, David; Parker, Benjamin Leo; Stoeckli, Jacqueline; Fisher-Wellman, Kelsey H; Humphrey, Sean; Jensen, Thomas E.; Jothi, Raja; Kiens, Bente; Kleinert, Maximillian; Richter, Erik A; Trefely, Sophie; Wojtaszewski, Jorgen F P; Yang, Pengyi; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; Biological Sciences; Molecular Bioscience; Molecular Bioscience; Molecular BioscienceGlobal Phosphoproteomic Analysis of Human Skeletal Muscle Reveals a Network of Exercise-Regulated Kinases and AMPK Substrates, Cell Metabolism, vol.22, 5, 2015,pp 922-935
2010Hierarchical kernel mixture models for the prediction of AIDS disease progression using HIV structural gp120 profilesCharleston, Michael; Saksena, Nitin; Yang, Pengyi; Yoo, Paul Dong-Hoon; Zomaya, Albert; Ho, Yung Shwen; Ng, Jason; Schl Information Technologies; Western Clinical School: Westmead Millennium Institute; Schl Information Technologies; Schl Information Technologies; Schl Information TechnologiesHierarchical kernel mixture models for the prediction of AIDS disease progression using HIV structural gp120 profiles, BMC Genomics, vol.11 Suppl 4, S22,pp 1-10
2017An improved Akt reporter reveals intra- and inter-cellular heterogeneity and oscillations in signal transductionBurchfield, James; Fazakerley, Daniel; James, David; Krycer, James; Norris, Dougall; Yang, Pengyi; School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES); Mathematics & StatisticsAn improved Akt reporter reveals intra- and inter-cellular heterogeneity and oscillations in signal transduction, Journal of Cell Science, vol.130, N/A, 2017,pp 2757-2766
2017Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cellsYang, Jean Yee Hwa; Yang, Pengyi; Ho, Joshua W.K.; Kim, Taiyun; Oldfield, Andrew J; Yang, Andrian; Mathematics & Statistics; Mathematics & StatisticsIntegrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells, Bioinformatics, vol.33, 13, 2017,pp 1916-1920
2017Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cellsYang, Jean Yee Hwa; Yang, Pengyi; Ho, Joshua W.K.; Oldfield, Andrew J; Taiyun, Kim; Yang, Andrian; Mathematics & Statistics; Mathematics & StatisticsIntegrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells, Bioinformatics, vol.33, 3, 2017,pp 1916-1920
2017Intragenic Enhancers Attenuate Host Gene ExpressionYang, Pengyi; Adelman, Karen; Cinghu, Senthilkumar; Conway, Amanda E; Jothi, Raja; Kosak, Justin; Kumar, Dhirendra; Oldfield, Andrew J; Mathematics & StatisticsIntragenic Enhancers Attenuate Host Gene Expression, Molecular Cell, vol.68, 1, 2017,pp 104-117
2014ISL1 Regulates Peroxisome Proliferator-Activated Receptor gamma Activation and Early Adipogenesis via Bone Morphogenetic Protein 4-Dependent and -Independent MechanismsJames, David; Yang, Jean Yee Hwa; Yang, Pengyi; Chisholm, Donald J; Kaplan, Warren; Lee, B Y; Ma, X; Sato, Kenzo; Wu, Lindsay; Yasunaga, Mayu; Molecular Bioscience; Mathematics & Statistics; Schl Information TechnologiesISL1 Regulates Peroxisome Proliferator-Activated Receptor gamma Activation and Early Adipogenesis via Bone Morphogenetic Protein 4-Dependent and -Independent Mechanisms, Molecular and Cellular Biology, vol.34, 19, 2014,pp 3607-3617
2016KinasePA: Phosphoproteomics data annotation using hypothesis driven kinase perturbation analysisGhazanfar, Shila; Humphrey, Sean; James, David; Yang, Jean Yee Hwa; Yang, Pengyi; Jothi, Raja; Patrick, Ellis; Mathematics & Statistics; School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES); Mathematics & Statistics; Mathematics & StatisticsKinasePA: Phosphoproteomics data annotation using hypothesis driven kinase perturbation analysis, Proteomics, vol.16, 13, 2016,pp 1868-1871
2015Knowledge-Based Analysis for Detecting Key Signaling Events from Time-Series Phosphoproteomics DataJayaswal, Vivek; Yang, Jean Yee Hwa; Hu, Guang; Jothi, Raja; Yang, Pengyi; Zheng, Xiaofeng; Mathematics & Statistics; Mathematics & StatisticsKnowledge-Based Analysis for Detecting Key Signaling Events from Time-Series Phosphoproteomics Data, PLoS Computational Biology, vol.11, 8, 2015,pp 1-18
2016mTORC1 Is a Major Regulatory Node in the FGF21 Signaling Network in AdipocytesDomanova, Westa; Fazakerley, Daniel; Humphrey, Sean; James, David; Minard, Annabel; Parker, Benjamin Leo; Stoeckli, Jacqueline; Yang, Pengyi; Jothi, Raja; Tan, Shi-Xiong; Physics; Molecular Bioscience; School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES); Molecular Bioscience; School of Life and Environmental Sciences (SOLES); Mathematics & StatisticsmTORC1 Is a Major Regulatory Node in the FGF21 Signaling Network in Adipocytes, Cell Reports, vol.17, 1, 2016,pp 29-36
2016mTORC1 Is a Major Regulatory Node in the FGF21 Signaling Network in AdipocytesDomanova, Westa; Fazakerley, Daniel; Humphrey, Sean; James, David; Minard, Annabel; Parker, Benjamin Leo; Stoeckli, Jacqueline; Yang, Pengyi; Jothi, Raja; Tan, Shi-Xiong; Physics; School of Molecular Bioscience (SMB); School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES); School of Molecular Bioscience (SMB); School of Life and Environmental Sciences (SOLES); Mathematics & StatisticsmTORC1 Is a Major Regulatory Node in the FGF21 Signaling Network in Adipocytes, Cell Reports, vol.17, 1, 2016,pp 29-36
2010A multi-filter enhanced genetic ensemble system for gene selection and sample classification of microarray dataYang, Pengyi; Zhou, Bing; Zomaya, Albert; Zhang, Zili; Schl Information Technologies; Schl Information Technologies; Schl Information TechnologiesA multi-filter enhanced genetic ensemble system for gene selection and sample classification of microarray data, BMC Bioinformatics, vol.11, Suppl 1,pp Page 1 of 12-Page 12 of 12