Issue Date | Title | Author(s) | Citation |

2014 | Among-site Rate Variation: Adaptation of Genetic Algorithm Mutation Rates at each Single Site | *Vafaee, Fatemeh; Berger-Wolf, Tanya Y.; Nelson, Peter C; Turan, Gyorgy; Charles Perkins Centre* | *Among-site Rate Variation: Adaptation of Genetic Algorithm Mutation Rates at each Single Site, Proceedings of the 2014 Conference on Genetic and Evolutionary Computation, vol.N/A, 2014, pp. 863-870* |

2014 | Balancing the exploration and exploitation in an adaptive diversity guided genetic algorithm | *Vafaee, Fatemeh; Berger-Wolf, Tanya Y.; Nelson, Peter C; Turan, Gyorgy; Mathematics & Statistics* | *Balancing the exploration and exploitation in an adaptive diversity guided genetic algorithm, Proceedings of the 2014 IEEE Congress on Evolutionary Computation (CEC 2014), vol.N/A, 2014, pp. 2570-2577* |

2014 | Balancing the exploration and exploitation in an adaptive diversity guided genetic algorithm | *Vafaee, Fatemeh; Berger-Wolf, Tanya Y.; Nelson, Peter C; Turan, Gyorgy; Mathematics & Statistics* | *Balancing the exploration and exploitation in an adaptive diversity guided genetic algorithm, Proceedings of the 2014 IEEE Congress on Evolutionary Computation (CEC 2014), vol.N/A, 2014, pp. 2570-2577* |

2014 | Balancing the exploration and exploitation in an adaptive diversity guided genetic algorithm | *Vafaee, Fatemeh; Berger-Wolf, Tanya Y.; Nelson, Peter C; Turan, Gyorgy; Mathematics & Statistics* | *Balancing the exploration and exploitation in an adaptive diversity guided genetic algorithm, Proceedings of the 2014 IEEE Congress on Evolutionary Computation (CEC 2014), vol.N/A, 2014, pp. 2570-2577* |

2014 | Balancing the exploration and exploitation in an adaptive diversity guided genetic algorithm | *Vafaee, Fatemeh; Berger-Wolf, Tanya Y.; Nelson, Peter C; Turan, Gyorgy; Mathematics & Statistics* | *Balancing the exploration and exploitation in an adaptive diversity guided genetic algorithm, Proceedings of the 2014 IEEE Congress on Evolutionary Computation (CEC 2014), vol.N/A, 2014, pp. 2570-2577* |

2014 | Balancing the exploration and exploitation in an adaptive diversity guided genetic algorithm | *Vafaee, Fatemeh; Berger-Wolf, Tanya Y.; Nelson, Peter C; Turan, Gyorgy; Mathematics & Statistics* | *Balancing the exploration and exploitation in an adaptive diversity guided genetic algorithm, Proceedings of the 2014 IEEE Congress on Evolutionary Computation (CEC 2014), vol.N/A, 2014, pp. 2570-2577* |

2014 | Balancing the exploration and exploitation in an adaptive diversity guided genetic algorithm | *Vafaee, Fatemeh; Berger-Wolf, Tanya Y.; Nelson, Peter C; Turan, Gyorgy; Mathematics & Statistics* | *Balancing the exploration and exploitation in an adaptive diversity guided genetic algorithm, Proceedings of the 2014 IEEE Congress on Evolutionary Computation (CEC 2014), vol.N/A, 2014, pp. 2570-2577* |

2017 | Exosomal microRNA signatures in multiple sclerosis reflect disease status | *Barnett, Michael; Beadnall, Heidi; Buckland, Michael; Devenney, Emma; Ebrahimkhani, Saeideh; Hawke, Simon; Vafaee, Fatemeh; Hur, Suzy S J; Suter, Catherine; Young, Paul; Central Clinical School: Inst. of Clinical Neurosciences; School of Medical Sciences: Brain and Mind Centre; School of Medical Sciences: Brain and Mind Centre; Concord Clinical School: Medicine; Medicine; School of Medical Sciences: Pathology; Mathematics & Statistics* | *Exosomal microRNA signatures in multiple sclerosis reflect disease status, Scientific Reports, vol.7, 1, 2017,pp 1-10* |

2017 | Functional prediction of long non-coding RNAs in ovarian cancer-Associated fibroblasts indicate a potential role in metastasis | *Colvin, Emily; Howell, Viive; Mok, Samuel; Samimi, Goli; Vafaee, Fatemeh; Northern Clinical School: Kolling Institute; Northern Clinical School: Kolling Institute* | *Functional prediction of long non-coding RNAs in ovarian cancer-Associated fibroblasts indicate a potential role in metastasis, Scientific Reports, vol.7, 1, 2017,pp 1-11* |

2015 | In silico prediction of physical protein interactions and characterization of interactome orphans | *Vafaee, Fatemeh; Broackes-Carter, Fiona; Cumbaa, Christian; Ding, Zhiyong; et al, Various; Kotlyar, Max; Li, Han; Lo Sardo, Alessandra; Naranian, Taline; Niu, Yun; Pastrello, Chiara; Pivetta, Flavia; Mathematics & Statistics* | *In silico prediction of physical protein interactions and characterization of interactome orphans, Nature Methods, vol.12, 1, 2015,pp 79-84* |

2016 | Intratumoral heterogeneity identified at the epigenetic, genetic and transcriptional level in glioblastoma | *Chen, Jason; Cheng, Zhangkai; Dwight, Trisha; Howell, Viive; Hudson, Amanda; Ikin, Rowan; Khong, Peter; Parker, Nicole Renee; Parkinson, Jonathon; Vafaee, Fatemeh; Wheeler, Helen; Zhu, Ying; Northern Clinical School: Pathology; Physics; Northern Clinical School: NCS Office; Northern Clinical School: Kolling Institute; Northern Clinical School: Kolling Institute; Northern Clinical School: Kolling Institute; Northern Clinical School: Kolling Institute; Northern Clinical School: Kolling Institute; Northern Clinical School: Kolling Institute; Mathematics & Statistics; Northern Clinical School: Medicine; Northern Clinical School: Medicine* | *Intratumoral heterogeneity identified at the epigenetic, genetic and transcriptional level in glioblastoma, Scientific Reports, vol.6, N/A, 2016,pp 1-10* |

2014 | Learning the Structure of Large-scale Bayesian Networks using Genetic Algorithm | *Vafaee, Fatemeh; Charles Perkins Centre* | *Learning the Structure of Large-scale Bayesian Networks using Genetic Algorithm, Proceedings of the 2014 Genetic and Evolutionary Computation Conference (GECCO 2014), vol.N/A, 2014, pp. 855-862* |

2016 | ORTI: An Open-Access Repository of Transcriptional Interactions for Interrogating Mammalian Gene Expression Data | *Burykin, T; James, David; Krycer, James; Kuncic, Zdenka; Ma, Xiuquan; Vafaee, Fatemeh; Schl Information Technologies; School of Life and Environmental Sciences (SOLES); Molecular Bioscience; Physics; Molecular Bioscience; Mathematics & Statistics* | *ORTI: An Open-Access Repository of Transcriptional Interactions for Interrogating Mammalian Gene Expression Data, PloS One, vol.11, 10, 2016,pp 1-21* |

2017 | The role of crossover operator in Bayesian network structure learning performance: A comprehensive comparative study and new insights | *Vafaee, Fatemeh; Contaldi, Carlo; Nelson, Peter C; Mathematics & Statistics* | *The role of crossover operator in Bayesian network structure learning performance: A comprehensive comparative study and new insights, Proceedings of the 2017 Genetic and Evolutionary Computation Conference (GECCO 2017), vol.N/A, 2017, pp. 769-776* |

2016 | Unraveling Kinase Activation Dynamics Using Kinase-Substrate Relationships from Temporal Large-Scale Phosphoproteomics Studies | *Chaudhuri, Rima; Domanova, Westa; Fazakerley, Daniel; James, David; Krycer, James; Kuncic, Zdenka; Vafaee, Fatemeh; Humphrey, Sean J; Yang, Pengyi; Molecular Bioscience; Physics; Molecular Bioscience; School of Life and Environmental Sciences (SOLES); Molecular Bioscience; Physics; Mathematics & Statistics* | *Unraveling Kinase Activation Dynamics Using Kinase-Substrate Relationships from Temporal Large-Scale Phosphoproteomics Studies, PloS One, vol.11, 6, 2016,pp 1-14* |

2016 | Unraveling the mechanistic complexity of Alzheimer's disease through systems biology | *Banihashemi, Nahid Linda; Holsinger, Damian; Kuncic, Zdenka; Rollo, Jennifer; Vafaee, Fatemeh; Crawford, John; Centre for Mathematical Biology; School of Medical Sciences: Biomedical Sciences; Physics; Charles Perkins Centre; Mathematics & Statistics* | *Unraveling the mechanistic complexity of Alzheimer's disease through systems biology, Alzheimer's and Dementia, vol.12, 6, 2016,pp 708-718* |

2016 | Unraveling the mechanistic complexity of Alzheimer's disease through systems biology | *Banihashemi, Nahid Linda; Holsinger, Damian; Kuncic, Zdenka; Rollo, Jennifer; Vafaee, Fatemeh; Crawford, John; Centre for Mathematical Biology; School of Medical Sciences: Biomedical Sciences; Physics; Charles Perkins Centre; Mathematics & Statistics* | *Unraveling the mechanistic complexity of Alzheimer's disease through systems biology, Alzheimer's and Dementia, vol.12, 6, 2016,pp 708-718* |

2016 | Using multi-objective optimization to identify dynamical network biomarkers as early-warning signals of complex diseases | *Vafaee, Fatemeh; Mathematics & Statistics* | *Using multi-objective optimization to identify dynamical network biomarkers as early-warning signals of complex diseases, Scientific Reports, vol.6, N/A, 2016,pp 1-124* |

2016 | Using Multi-objective Optimization to Identify Dynamical Network Biomarkers as Early-warning Signals of Complex Diseases | *Vafaee, Fatemeh; Mathematics & Statistics* | *Using Multi-objective Optimization to Identify Dynamical Network Biomarkers as Early-warning Signals of Complex Diseases, Scientific Reports, vol.6, N/A, 2016,pp 1-12* |