Browsing by Author Maharjan, Ram

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Issue DateTitleAuthor(s)Citation
2013The basis of antagonistic pleiotropy in hfq mutations that have opposite effects on fitness at slow and fast growth ratesFerenci, Thomas (Tom); Maharjan, Ram; McKenzie, Christopher; Yeung, A; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; Molecular BioscienceThe basis of antagonistic pleiotropy in hfq mutations that have opposite effects on fitness at slow and fast growth rates, Heredity, vol.110, 1, 2013,pp 10-18
2013A case of adaptation through a mutation in a tandem duplication during experimental evolution in Escherichia coliFerenci, Thomas (Tom); Maharjan, Ram; Schliep, Martin; Feng, Lu; Gaffé, Joël; Plucain, Jessica; Schneider, Dominique; Tenaillon, Olivier; Wang, Lei; Molecular Bioscience; Molecular Bioscience; Biological SciencesA case of adaptation through a mutation in a tandem duplication during experimental evolution in Escherichia coli, BMC Genomics, vol.14, 1, 2013,pp 1-12
2006Clonal Adaptive Radiation in a Constant Environment.Ferenci, Thomas (Tom); Maharjan, Ram; Notley-McRobb, Lucinda; Seeto, Shona; Molecular & Microbial Bioscien; Molecular & Microbial Bioscien; Medicine; Molecular & Microbial BioscienClonal Adaptive Radiation in a Constant Environment., Science, vol.313,(5786),2006,pp 514-517
2005Comparative metabolome profiling using two dimensional thin layer chromatography (2DTLC)Ferenci, Thomas (Tom); Maharjan, Ram; School of Molecular Bioscience; School of Molecular BioscienceComparative metabolome profiling using two dimensional thin layer chromatography (2DTLC) in Metabolome Analyses - Strategies for Systems Biology, Springer Science + Business Media Inc., 2005, pp. 63-81
2007Divergence and redundancy of transport and metabolic rate-yield strategies in a single Escherichia coli populationFerenci, Thomas (Tom); Maharjan, Ram; Seeto, Shona; Molecular & Microbial Bioscien; Molecular & Microbial Bioscien; Molecular & Microbial BioscienDivergence and redundancy of transport and metabolic rate-yield strategies in a single Escherichia coli population, Journal of Bacteriology, vol.189,(6),2007,pp 2350-2358
2010Divergence Involving Global Regulatory Gene Mutations in an Escherichia Coli Population Evolving under Phosphate LimitationFerenci, Thomas (Tom); Maharjan, Ram; McKenzie, Christopher; Reeves, Peter; Spira, Beny; Feng, Lu; Li, Fangfang; Li, Xiaomin; Wang, Lei; Zhou, Zhemin; School of Molecular Bioscience; School of Molecular Bioscience; School of Molecular Bioscience; School of Molecular Bioscience; School of Molecular BioscienceDivergence Involving Global Regulatory Gene Mutations in an Escherichia Coli Population Evolving under Phosphate Limitation, Genome Biology and Evolution, vol.2, 1,pp 478-487
2013Epistatic interactions determine the mutational pathways and coexistence of lineages in clonal Escherichia coli populationsFerenci, Thomas (Tom); Maharjan, Ram; Molecular Bioscience; Molecular BioscienceEpistatic interactions determine the mutational pathways and coexistence of lineages in clonal Escherichia coli populations, Evolution, vol.67, 9, 2013,pp 2762-2768
2017The fitness costs and benefits of antibiotic resistance in drug-free microenvironments encountered in the human bodyFerenci, Thomas (Tom); Maharjan, Ram; School of Life and Environmental Sciences (SOLES); School of Molecular Bioscience (SMB)The fitness costs and benefits of antibiotic resistance in drug-free microenvironments encountered in the human body, Environmental Microbiology Reports, vol.9, 5, 2017,pp 635-641
2013The form of a trade-off determines the response to competitionFerenci, Thomas (Tom); Maharjan, Ram; Sung, Judy; Beardmore, Robert; Gudelj, Ivana; Haynes, Ken; Hurst, Laurence; Nilsson, Susanna; Molecular Bioscience; Molecular Bioscience; Biomedical SciencesThe form of a trade-off determines the response to competition, Ecology Letters, vol.16, 10, 2013,pp 1267-1276
2010Genomic Identification of a Novel Mutation in hfq That Provides Multiple Benefits in Evolving Glucose-Limited Populations of Escherichia coliFerenci, Thomas (Tom); Maharjan, Ram; McKenzie, Christopher David; Reeves, Peter; Gaffé, Joël; Li, Yang; Ren, Yan; Schneider, Dominique; Wang, Lei; Zhou, Zhemin; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; Molecular BioscienceGenomic Identification of a Novel Mutation in hfq That Provides Multiple Benefits in Evolving Glucose-Limited Populations of Escherichia coli, Journal of Bacteriology, vol.192, 17, 2010,pp 4517-4521
2003Global metabolite analysis: the influence of extraction methodology on metabolome profiles of Escherichia coliFerenci, Thomas (Tom); Maharjan, Ram; Molecular & Microbial Bioscien; Molecular & Microbial BioscienGlobal metabolite analysis: the influence of extraction methodology on metabolome profiles of Escherichia coli, Analytical Biochemistry, vol.313,(1),2003,pp 145-154
2014A metabolic trade-off between phosphate and glucose utilization in Escherichia coliFerenci, Thomas (Tom); Maharjan, Ram; Ryall, Ben; Behrends, V; Bundy, J G; Feng, Lu; Liu, Bin; Wang, Lei; Molecular Bioscience; Molecular Bioscience; Molecular BioscienceA metabolic trade-off between phosphate and glucose utilization in Escherichia coli, Molecular BioSystems, vol.10, 11, 2014,pp 2820-2822
2005Metabolomic diversity in the species Escherichia coli and its relationship to genetic population structureFerenci, Thomas (Tom); Maharjan, Ram; Molecular & Microbial Bioscien; Molecular & Microbial BioscienMetabolomic diversity in the species Escherichia coli and its relationship to genetic population structure, Metabolomics, vol.1,(3),2005,pp 235-242
2016Metastable coexistence of multiple genotypes in a constant environment with a single resource through fixed settings of a multiplication-survival trade-offFerenci, Thomas (Tom); Maharjan, Ram; School of Life and Environmental Sciences (SOLES); Molecular BioscienceMetastable coexistence of multiple genotypes in a constant environment with a single resource through fixed settings of a multiplication-survival trade-off, Research in Microbiology, vol.167, 3, 2016,pp 240-246
2012The multiplicity of divergence mechanisms in a single evolving populationFerenci, Thomas (Tom); Maharjan, Ram; Reeves, Peter; Li, Yang; Liu, Bin; Wang, Lei; Molecular Bioscience; Molecular Bioscience; Molecular BioscienceThe multiplicity of divergence mechanisms in a single evolving population, Genome Biology, vol.13, 6, 2012,pp 1-16
2013Mutation accumulation and fitness in mutator subpopulations of Escherichia coliFerenci, Thomas (Tom); Maharjan, Ram; Reeves, Peter; Li, Yang; Liu, Bin; Wang, Lei; Molecular Bioscience; Molecular Bioscience; Molecular BioscienceMutation accumulation and fitness in mutator subpopulations of Escherichia coli, Biology Letters, vol.9, 1, 2013,pp 1-5
2015Mutational heterogeneity: A key ingredient of bet-hedging and evolutionary divergence?: The broad spectrum of mutations and their flexible frequency in populations provides a source of risk avoidance and alternative evolutionary strategiesFerenci, Thomas (Tom); Maharjan, Ram; Molecular Bioscience; Molecular BioscienceMutational heterogeneity: A key ingredient of bet-hedging and evolutionary divergence?: The broad spectrum of mutations and their flexible frequency in populations provides a source of risk avoidance and alternative evolutionary strategies, BioEssays, vol.37, 2, 2015,pp 123-130
2015Mutational Signatures Indicative of Environmental Stress in BacteriaFerenci, Thomas (Tom); Maharjan, Ram; Molecular Bioscience; Molecular BioscienceMutational Signatures Indicative of Environmental Stress in Bacteria, Molecular Biology and Evolution, vol.32, 2, 2015,pp 380-391
2017Natural Escherichia coli isolates rapidly acquire genetic changes upon laboratory domesticationEydallin, Gustavo; Ferenci, Thomas (Tom); Maharjan, Ram; Feng, Lu; Liu, Bin; Wang, Lei; School of Molecular Bioscience (SMB); School of Life and Environmental Sciences (SOLES); School of Molecular Bioscience (SMB)Natural Escherichia coli isolates rapidly acquire genetic changes upon laboratory domestication, Microbiology, vol.163, N/A, 2017,pp 22-30
2014The nature of laboratory domestication changes in freshly isolated Escherichia coli strainsEydallin, Gustavo; Ferenci, Thomas (Tom); Maharjan, Ram; Ryall, Ben; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; Molecular BioscienceThe nature of laboratory domestication changes in freshly isolated Escherichia coli strains, Environmental Microbiology, vol.16, 3, 2014,pp 813-828