Browsing by Author Holmes, Edward

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Issue DateTitleAuthor(s)Citation
201617th Century Variola Virus Reveals the Recent History of SmallpoxBuchmann, Jan; Duchene, Sebastian; Holmes, Edward; Duggan, Ana; Emery, Matthew; et al, Various; Golding, G. Brian; Humphreys, Margaret; Jankauskas, Rimantas; Marciniak, Stephanie; Perdomo, Maria; Piombino-Mascali, Dario; Poinar, Debi; Biological Sciences; Biological Sciences; School of Life and Environmental Sciences (SOLES)17th Century Variola Virus Reveals the Recent History of Smallpox, Current Biology, vol.26, 24, 2016,pp 3407-3412
201617th Century Variola Virus Reveals the Recent History of SmallpoxBuchmann, Jan; Duchene, Sebastian; Holmes, Edward; Duggan, Ana; Emery, Matthew; et al, Various; Golding, G. Brian; Humphreys, Margaret; Jankauskas, Rimantas; Marciniak, Stephanie; Perdomo, Maria; Piombino-Mascali, Dario; Poinar, Debi; Biological Sciences; Biological Sciences; School of Life and Environmental Sciences (SOLES)17th Century Variola Virus Reveals the Recent History of Smallpox, Current Biology, vol.26, 24, 2016,pp 3407-3412
2013Adaptive evolution of bat dipeptidyl peptidase 4 (dpp4): Implications for the origin and emergence of Middle East Respiratory Syndrome CoronavirusCui, Jie; Eden, John-Sebastian; Holmes, Edward; Wang, Lin-Fa; Biological Sciences; Biological Sciences; Biological SciencesAdaptive evolution of bat dipeptidyl peptidase 4 (dpp4): Implications for the origin and emergence of Middle East Respiratory Syndrome Coronavirus, Virology Journal, vol.10, N/A, 2013,pp 1-5
2014An allometric relationship between the genome length and virion volume of virusesCui, Jie; Holmes, Edward; Schlub, Timothy; Biological Sciences; Sydney Institute for Emerging Infectious Diseases and Biosec; Central Clinical School: MedicineAn allometric relationship between the genome length and virion volume of viruses, Journal of Virology, vol.88, 11, 2014,pp 6403-6410
2014Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimatesDuchene, Sebastian; Ho, Simon; Holmes, Edward; Biological Sciences; Biological Sciences; Sydney Institute for Emerging Infectious Diseases and BiosecAnalyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates, Proceedings of the Royal Society B: Biological Sciences, vol.281, 1786, 2014,pp 1-7
2014Analysis of viral (zucchini yellow mosaic virus) genetic diversity during systemic movement through a Cucurbita pepo vineHolmes, Edward; Dunham, Joseph P; Simmons, Heather E.; Stephenson, Andrew G; Sydney Institute for Emerging Infectious Diseases and BiosecAnalysis of viral (zucchini yellow mosaic virus) genetic diversity during systemic movement through a Cucurbita pepo vine, Virus Research, vol.191, C, 2014,pp 172-179
2013Ancient invasion of an extinct gammaretrovirus in cetaceansCui, Jie; Holmes, Edward; He, Guimei; Rossiter, Stephen J; Wang, Lina; Yin, Qiuyuan; Biological Sciences; Biological SciencesAncient invasion of an extinct gammaretrovirus in cetaceans, Virology, vol.441, 1, 2013,pp 66-69
2014Arboretum and Puerto Almendras viruses: two novel rhabdoviruses isolated from mosquitoes in PeruHolmes, Edward; Aguilar, Patricia; Auguste, Albert; Castro-Llanos, Fanny; et al, Various; Fernandez, Roberto; Guevara, Carolina; Guzman, Hilda; Popov, Vsevolod; Vasilakis, Nikos; Widen, Steven; Wood, Thomas; Sydney Institute for Emerging Infectious Diseases and BiosecArboretum and Puerto Almendras viruses: two novel rhabdoviruses isolated from mosquitoes in Peru, The Journal of General Virology, vol.95, Pt4, 2014,pp 787-792
2015Assessing the epidemiological effect of wolbachia for dengue controlHolmes, Edward; Ferguson, Neil; Harris, Eva; Lambrechts, Louis; McGraw, Elizabeth; O'Neill, Scott; Ooi, Eng; Ritchie, S.A.; Ryan, Peter; Scott, Thomas; Simmons, Cameron; Weaver, Scott C; Biological SciencesAssessing the epidemiological effect of wolbachia for dengue control, The Lancet Infectious Diseases, vol.15, 7, 2015,pp 862-866
2017Autochthonous Japanese Encephalitis with Yellow Fever Coinfection in AfricaHolmes, Edward; Casademont, Isabelle; Diagne, Moussa; Fall, Gamou; Fall, Ibrahima; Faye, Ousmane; Fernandez-Garcia, Maria; Kipela, Jean-Marie; Prot, Mattieu; Sakuntabhai, Anavaj; Sall, Amadou A; Simon-Loriere, Etienne; School of Life and Environmental Sciences (SOLES)Autochthonous Japanese Encephalitis with Yellow Fever Coinfection in Africa, New England Journal of Medicine, vol.376, 15, 2017,pp 1483-1485
2015Avian influenza virus exhibits distinct evolutionary dynamics in wild birds and poultryFourment, Mathieu; Holmes, Edward; Biological Sciences; Biological SciencesAvian influenza virus exhibits distinct evolutionary dynamics in wild birds and poultry, BMC Evolutionary Biology, vol.15, 1, 2015,pp 1-6
2014Avian oncogenesis induced by lymphoproliferative disease virus: A neglected or emerging retroviral pathogen?Holmes, Edward; Allison, Andrew; Brown, Justin; Cartoceti, Andrew; Crum, James; Fadly, Aly; Kevin, Keel; Lichtenwalner, Anne; Munk, Brandon; Nemeth, Nicole; Philips, Jamie; Thomas, Jesse; Welsh, Trista; Zavala, Guillermo; Sydney Institute for Emerging Infectious Diseases and BiosecAvian oncogenesis induced by lymphoproliferative disease virus: A neglected or emerging retroviral pathogen?, Virology, vol.450-451, N/A, 2014,pp 2-12
2016A Bat-Derived Putative Cross-Family Recombinant Coronavirus with a Reovirus GeneHolmes, Edward; et al, Various; Huang, Canping; Ji, Wei; Jia, Hao; Jin, Tao; Liu, William; Shi, Yi; Song, Jindong; Xu, Wen; Zhao, Yingze; School of Life and Environmental Sciences (SOLES)A Bat-Derived Putative Cross-Family Recombinant Coronavirus with a Reovirus Gene, PLoS Pathogens, vol.12, 9, 2016,pp 1-25
2013Bats are a major natural reservoir for hepaciviruses and pegivirusesHolmes, Edward; Agwanda, Bernard; Akaibe, Dudu; Alvarez Castillo, Danilo; Anthony, Simon; Blau, Diana; Breiman, Robert F; Briese, Thomas; Conte, Juliette; Daszak, Peter; Davis, Lora; Ellison, James A; Epstein, Jonathan; Firth, Cadhla; Gilbert, Amy T; Kalemba, Lems; Kuzmin, Ivan V.; Lindblade, Kim; Lipkin, W Ian; Malekani, Jean; Markotter, Wanda; Moran, David; Ngam, Sali; Niezgoda, Michael; Ogunkoya, Albert; Ojeda-Flores, Rafael; Osinubi, Modupe; Quan, Phenix-Lan; Recuenco, Sergio; Rostal, Melinda; Rupprecht, Charles E; Suzan, Gerardo; Williams, Simon; Zambrana-Torrelio, Carlos; Biological SciencesBats are a major natural reservoir for hepaciviruses and pegiviruses, Proceedings of the National Academy of Sciences (PNAS), vol.110, 20, 2013,pp 8194-8199
2017Benign Rabbit Calicivirus in New ZealandHolmes, Edward; Mahar, Jackie; Duckworth, Janine; Nicholson, Leila; Strive, Tanja; Ward, Vernon; Zheng, Tao; School of Life and Environmental Sciences (SOLES); School of Biological SciencesBenign Rabbit Calicivirus in New Zealand, Applied and Environmental Microbiology, vol.83, 11, 2017,pp e00090-17-N/A
2016Benign Rabbit Caliciviruses Exhibit Evolutionary Dynamics Similar to Those of Their Virulent RelativesDuchene, Sebastian; Eden, John-Sebastian; Holmes, Edward; Kerr, Peter; Mahar, Jackie; Duckworth, J.A; Nicholson, Leila; Strive, Tanja; Ward, Vernon; Biological Sciences; Biological Sciences; School of Life and Environmental Sciences (SOLES); Molecular Bioscience; Biological SciencesBenign Rabbit Caliciviruses Exhibit Evolutionary Dynamics Similar to Those of Their Virulent Relatives, Journal of Virology, vol.90, 20, 2016,pp 9317-9329
2014Biodiversity and evolution of Imjin virus and Thottapalayam virus in Crocidurinae shrews in Zhejiang Province, ChinaHolmes, Edward; Fan, Fei-Neng; Lin, Xian-Dan; Suna, Xiao-Yu; Wang, Wen; Ying, Xuhua; Zhang, Yong-Zhen; Zhou, Run-Hong; Sydney Institute for Emerging Infectious Diseases and BiosecBiodiversity and evolution of Imjin virus and Thottapalayam virus in Crocidurinae shrews in Zhejiang Province, China, Virus Research, vol.189, N/A, 2014,pp 114-120
2018The Biological Object Notation (BON): A structured file format for biological dataBuchmann, Jan; Holmes, Edward; Fourment, Mathieu; School of Biological Sciences; School of Life and Environmental Sciences (SOLES)The Biological Object Notation (BON): A structured file format for biological data, Scientific Reports, vol.8, 1, 2018,pp 1-8
2018The Biological Object Notation (BON): A structured file format for biological dataBuchmann, Jan; Holmes, Edward; Fourment, Mathieu; School of Biological Sciences; School of Life and Environmental Sciences (SOLES)The Biological Object Notation (BON): A structured file format for biological data, Scientific Reports, vol.8, 1, 2018,pp 1-8
2018The Biological Object Notation (BON): A structured file format for biological dataBuchmann, Jan; Holmes, Edward; Fourment, Mathieu; School of Biological Sciences; School of Life and Environmental Sciences (SOLES)The Biological Object Notation (BON): A structured file format for biological data, Scientific Reports, vol.8, 1, 2018,pp 1-8