Browsing by Author Geoghegan, Jemma Louise

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Showing results 1 to 14 of 14
Issue DateTitleAuthor(s)Citation
2017Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral familiesDuchene, Sebastian; Geoghegan, Jemma Louise; Holmes, Edward; School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES)Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families, PLoS Pathogens, vol.13, 2, 2017,pp e1006215-N/A
2014Contact Heterogeneity, Rather Than Transmission Efficiency, Limits the Emergence and Spread of Canine Influenza VirusGeoghegan, Jemma Louise; Holmes, Edward; Arinaminpathy, Nimalan; Dalziel, Benjamin D.; Dubovi, Edward; Ellner, Stephen P.; Grenfell, Bryan; Huang, Kai-Kai; Parrish, Colin R; Biological Sciences; Sydney Institute for Emerging Infectious Diseases and BiosecContact Heterogeneity, Rather Than Transmission Efficiency, Limits the Emergence and Spread of Canine Influenza Virus, PLoS Pathogens, vol.10, 10, 2014,pp 1-13
2016Cross-validation to select Bayesian hierarchical models in phylogeneticsDi Giallonardo, Francesca; Duchene, David; Duchene, Sebastian; Eden, John-Sebastian; Geoghegan, Jemma Louise; Ho, Simon; Holmes, Edward; Holt, Kathryn E; Biological Sciences; Biological Sciences; Biological Sciences; Biological Sciences; Biological Sciences; School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES)Cross-validation to select Bayesian hierarchical models in phylogenetics, BMC Evolutionary Biology, vol.16, 1, 2016,pp 1-8
2016Cross-validation to select Bayesian hierarchical models in phylogeneticsDi Giallonardo, Francesca; Duchene, David; Duchene, Sebastian; Eden, John-Sebastian; Geoghegan, Jemma Louise; Ho, Simon; Holmes, Edward; Holt, Kathryn E; Biological Sciences; Biological Sciences; Biological Sciences; Biological Sciences; Biological Sciences; School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES)Cross-validation to select Bayesian hierarchical models in phylogenetics, BMC Evolutionary Biology, vol.16, 1, 2016,pp 1-8
2016Estimating evolutionary rates using time-structured data: a general comparison of phylogenetic methodsDuchene, Sebastian; Geoghegan, Jemma Louise; Ho, Simon; Holmes, Edward; School of Biological Sciences; School of Biological Sciences; School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES)Estimating evolutionary rates using time-structured data: a general comparison of phylogenetic methods, Bioinformatics, vol.32, 22, 2016,pp 3375-3379
2016Fluid spatial dynamics of West Nile virus in the USA: rapid spread in a permissive host environmentDi Giallonardo, Francesca; Geoghegan, Jemma Louise; Holmes, Edward; Birren, Bruce; Docherty, Douglas; Ip, Hon; Malboeuf, Christine; McLean, Robert; Newman, Ruchi; Qu, James; Yang, Xiao; Zody, Michael C; Biological Sciences; Biological Sciences; School of Life and Environmental Sciences (SOLES)Fluid spatial dynamics of West Nile virus in the USA: rapid spread in a permissive host environment, Journal of Virology, vol.90, 2, 2016,pp 862-872
2015A generic assay for whole-genome amplification and deep sequencingof enterovirus A71Geoghegan, Jemma Louise; Holmes, Edward; et al, Various; Ngan, Tran Thuy; Nguyet, Lam Anh; Ong, Kienchai; Sabanathan, Saraswathy; Tan, Le Van; Thanh, Le Thi My; Thanh, Tran; Tuyen, Nguyen; Van, Hoang; Van, Tran Thi My; Biological Sciences; Biological SciencesA generic assay for whole-genome amplification and deep sequencingof enterovirus A71, Journal of Virological Methods, vol.215-216, N/A, 2015,pp 30-36
2015Modelling the spread of influenza in Western AustraliaDurrant-Whyte, Hugh; Geoghegan, Jemma Louise; Holmes, Edward; Saavedra, Aldo; Wood, Sally; Engineering Faculty Admin; Biological Sciences; Biological Sciences; Schl Information Technologies; Business AnalyticsModelling the spread of influenza in Western Australia, Proceedings of the First International Workshop on Population Informatics for Big Data (ACM-SIGKDD PopInfo'15), vol.1, 2015, pp. 1-8
2014Molecular evolution and antigenic variation of European brown hare syndrome virus (EBHSV)Geoghegan, Jemma Louise; Holmes, Edward; Abrantes, Joana; Barbieri, Ilaria; Brocchi, Emiliana; Capucci, Lorenzo; Esteves, Pedro; Gavier-Widen, Dolores; Le Gall-Recule, Ghislaine; Le Pendu, Jacques; Lopes, Ana; Quemener, Agnes; Biological Sciences; Sydney Institute for Emerging Infectious Diseases and BiosecMolecular evolution and antigenic variation of European brown hare syndrome virus (EBHSV), Virology, vol.468-470, N/A, 2014,pp 104-112
2016Pathogen population bottlenecks and adaptive landscapes: overcoming the barriers to disease emergenceGeoghegan, Jemma Louise; Holmes, Edward; Senior, Alistair; Biological Sciences; School of Life and Environmental Sciences (SOLES); Mathematics & StatisticsPathogen population bottlenecks and adaptive landscapes: overcoming the barriers to disease emergence, Proceedings of the Royal Society B, vol.283, 1837, 2016,pp 1-9
2016Pathogen population bottlenecks and adaptive landscapes: overcoming the barriers to disease emergenceGeoghegan, Jemma Louise; Holmes, Edward; Senior, Alistair; Biological Sciences; School of Life and Environmental Sciences (SOLES); Mathematics & StatisticsPathogen population bottlenecks and adaptive landscapes: overcoming the barriers to disease emergence, Proceedings of the Royal Society B, vol.283, 1837, 2016,pp 1-9
2015Phylodynamics of enterovirus A71-associated hand, foot, and mouth disease in Viet NamGeoghegan, Jemma Louise; Holmes, Edward; Akopov, Asmik; Chau,, Nguyen Van Vinh; Das, Suman R; Grenfell, Bryan; Halpin, Rebecca A; Hang, Vu Thi Ty; Hien,, Tran Tinh M; Hung,, Nguyenthanh; Khanh,, Truong Huu; Kuhnert, Denise; Lin, Xudong; Ngoc, Nghiem My; Qui,, Phan Tu U; Shrivastava, Susmita; Simenauer, Ari; Stadler,, Tanja; Stockwell, Timothy; Tan, Le Van; Thanh, Le; Thanh Nhan,, Le Nguyen; Thinh,, Le Quoc; Thwaites, Guy; Tuan,, Hamanh; Tuyen, Nguyen; Uyen, Le Thi Tam, Le Thi Tam; Van Doorn, Hemke Rogier; Van,, Hoang Minh Tu; Viet, HO Lu; Viet,, Do Chau; Wentworth, David; Biological Sciences; Biological SciencesPhylodynamics of enterovirus A71-associated hand, foot, and mouth disease in Viet Nam, Journal of Virology, vol.89, 17, 2015,pp 8871-8879
2014Seasonal Drivers of the Epidemiology of Arthropod-Borne Viruses in AustraliaGeoghegan, Jemma Louise; Holmes, Edward; Duchemin, Jean-Bernard; Jeanne, Isabelle; Walker, Peter J; Biological Sciences; Sydney Institute for Emerging Infectious Diseases and BiosecSeasonal Drivers of the Epidemiology of Arthropod-Borne Viruses in Australia, PLoS Neglected Tropical Diseases, vol.8, 11, 2014,pp 1-10
2016Virological factors that increase the transmissibility of emerging human virusesDi Giallonardo, Francesca; Geoghegan, Jemma Louise; Holmes, Edward; Senior, Alistair; Biological Sciences; Biological Sciences; School of Life and Environmental Sciences (SOLES); Mathematics & StatisticsVirological factors that increase the transmissibility of emerging human viruses, Proceedings of the National Academy of Sciences of the United States of America (PNAS), vol.113, 15, 2016,pp 4170-4175