Browsing by Author Chaudhuri, Rima

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Issue DateTitleAuthor(s)Citation
2015Cross-species gene expression analysis identifies a novel set of genes implicated in human insulin sensitivityChaudhuri, Rima; Fazakerley, Daniel; Hocking, Samantha; James, David; Stockli, Jacqueline; Yang, Jean Yee Hwa; Greenfield, Jerry R; Hoehn, Kyle L; Junutula, Jagath R.; Khoo, Poh Sim; Kolumam, Ganesh; Meoli, Christopher C.; Modrusan, Zora; Samocha-Bonet, Dorit; Tonks, Katherine; Molecular Bioscience; Molecular Bioscience; Northern Clinical School: Medicine; Molecular Bioscience; Molecular Bioscience; Mathematics & StatisticsCross-species gene expression analysis identifies a novel set of genes implicated in human insulin sensitivity, Npj Systems Biology And Applications, vol.1, N/A, 2015,pp 1-10
2017Cross-Species PTM Mapping from Phosphoproteomic DataChaudhuri, Rima; Yang, Jean Yee Hwa; School of Life and Environmental Sciences (SOLES); Mathematics & StatisticsCross-Species PTM Mapping from Phosphoproteomic Data in Protein Bioinformatics: From Protein Modifications and Networks to Proteomics, Humana Press, 2017, pp. 459-469
2015Dataset from the global phosphoproteomic mapping of early mitotic exit in human cellsChaudhuri, Rima; Hoffman, Nolan; James, David; Parker, Benjamin Leo; Burgess, Andrew J; Daly, Roger; Gayevskiy, Velimir; McCloy, Rachael; Rogers, Samuel; Watkins, D Neil; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; Molecular BioscienceDataset from the global phosphoproteomic mapping of early mitotic exit in human cells, Data in Brief, vol.5, N/A, 2015,pp 45-52
2014DOC2 isoforms play dual roles in insulin secretion and insulin-stimulated glucose uptakeJames, David; Burchfield, James; Cantley, James; Chaudhuri, Rima; Groffen, Alexander J A; Li, Jia; Meoli, Christopher C.; Pant, Himani; Stockli, Jacqueline; Verhage, Mattijs; Whitworth, P Tess; Molecular BioscienceDOC2 isoforms play dual roles in insulin secretion and insulin-stimulated glucose uptake, Diabetologia, vol.57, 10, 2014,pp 2173-2182
2015Global Phosphoproteomic Analysis of Human Skeletal Muscle Reveals a Network of Exercise-Regulated Kinases and AMPK SubstratesBurchfield, James; Chaudhuri, Rima; Fazakerley, Daniel; Hoffman, Nolan; Holliday, Mira; James, David; Parker, Benjamin Leo; Stoeckli, Jacqueline; Fisher-Wellman, Kelsey H; Humphrey, Sean; Jensen, Thomas E.; Jothi, Raja; Kiens, Bente; Kleinert, Maximillian; Richter, Erik A; Trefely, Sophie; Wojtaszewski, Jorgen F P; Yang, Pengyi; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; Biological Sciences; Molecular Bioscience; Molecular Bioscience; Molecular BioscienceGlobal Phosphoproteomic Analysis of Human Skeletal Muscle Reveals a Network of Exercise-Regulated Kinases and AMPK Substrates, Cell Metabolism, vol.22, 5, 2015,pp 922-935
2015Global Phosphoproteomic Mapping of Early Mitotic Exit in Human Cells Identifies Novel Substrate Dephosphorylation MotifsChaudhuri, Rima; Hoffman, Nolan; James, David; Parker, Benjamin Leo; Ali, Naveid; Burgess, Andrew; Castro, Anna; Daly, Roger; Gayevskiy, Velimir; Lorca, Thierry; McCloy, Rachael; Rogers, Samuel; Watkins, Neil; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; Molecular BioscienceGlobal Phosphoproteomic Mapping of Early Mitotic Exit in Human Cells Identifies Novel Substrate Dephosphorylation Motifs, Molecular and Cellular Proteomics, vol.14, 8, 2015,pp 2194-2212
2016Hyperactivation of the Insulin Signaling Pathway Improves Intracellular Proteostasis by Coordinately Up-regulating the Proteostatic Machinery in AdipocytesChaudhuri, Rima; Cooney, Gregory; Humphrey, Sean; James, David; Minard, Annabel; Parker, Benjamin Leo; Stoeckli, Jacqueline; Wong, Martin Kin Lok; Yang, Jean Yee Hwa; Coster, Adelle; Laybutt, D. Ross; Tan, Shi-Xiong; Molecular Bioscience; School of Medical Sciences: School of Medical Sciences; School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES); Molecular Bioscience; School of Life and Environmental Sciences (SOLES); Physics; Mathematics & StatisticsHyperactivation of the Insulin Signaling Pathway Improves Intracellular Proteostasis by Coordinately Up-regulating the Proteostatic Machinery in Adipocytes, Journal of Biological Chemistry, vol.291, 49, 2016,pp 25629-25640
2016Hyperactivation of the Insulin Signaling Pathway Improves Intracellular Proteostasis by Coordinately Up-regulating the Proteostatic Machinery in AdipocytesChaudhuri, Rima; Cooney, Gregory; Humphrey, Sean; James, David; Minard, Annabel; Parker, Benjamin Leo; Stoeckli, Jacqueline; Wong, Martin Kin Lok; Yang, Jean Yee Hwa; Coster, Adelle; Laybutt, D. Ross; Tan, Shi-Xiong; Molecular Bioscience; School of Medical Sciences: School of Medical Sciences; School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES); Molecular Bioscience; School of Life and Environmental Sciences (SOLES); Physics; Mathematics & StatisticsHyperactivation of the Insulin Signaling Pathway Improves Intracellular Proteostasis by Coordinately Up-regulating the Proteostatic Machinery in Adipocytes, The Journal of Biological Chemistry, vol.291, 49, 2016,pp 25629-25640
2016Integrated expression analysis of muscle hypertrophy identifies Asb2 as a negative regulator of muscle massChaudhuri, Rima; James, David; Parker, Benjamin Leo; Chamberlain, Jeffrey; Cunningham, Louise; Davey, Jonathan; Gregorevic, Paul; Qian, Hongwei; Ryall, James; Sandri, Marco; Sartorelli, Vittorio; Watt, Kevin; School of Molecular Bioscience (SMB); School of Life and Environmental Sciences (SOLES); School of Molecular Bioscience (SMB)Integrated expression analysis of muscle hypertrophy identifies Asb2 as a negative regulator of muscle mass, JCI Insight, vol.1, 5, 2016,pp 1-15
2015Kinome Screen Identifies PFKFB3 and Glucose Metabolism as Important Regulators of the Insulin/IGF-1 Signalling PathwayChaudhuri, Rima; Fazakerley, Daniel; James, David; Krycer, James; Parker, Benjamin Leo; Stoeckli, Jacqueline; Jung, Kenneth; Junutula, Jagath R.; Khoo, Poh-Sim; Kuijl, Coenraad; Lee, James; Stephan, Jean-Philippe; Sultani, Ghazal; Torres, Eric; Trefely, Sophie; Molecular Bioscience; Molecular Bioscience; School of Life and Environmental Sciences (SOLES); Molecular Bioscience; Molecular Bioscience; Molecular BioscienceKinome Screen Identifies PFKFB3 and Glucose Metabolism as Important Regulators of the Insulin/IGF-1 Signalling Pathway, The Journal of Biological Chemistry, vol.290, 43, 2015,pp 25834-25846
2017Metabolomic analysis of insulin resistance across different mouse strains and dietsChaudhuri, Rima; Cooney, Gregory; Fazakerley, Daniel; Hoffman, Nolan; James, David; Stöckli, Jacqueline; Thomas, Kristen; Zeng, Xiaoyi; Andrikopoulos, Sofianos; Fisher-Wellman, Kelsey H; Ilkayeva, Olga; Mangiafico, S; Meoli, Christopher C.; Muoio, Deborah M; Wong, Kari; Xirouchaki, Chrysovalantou E; Yang, Chieh-Hsin; School of Life and Environmental Sciences (SOLES); School of Medical Sciences: School of Medical Sciences; School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES)Metabolomic analysis of insulin resistance across different mouse strains and diets, Journal of Biological Chemistry, vol.292, 47, 2017,pp 19135-19145
2016mTORC2 and AMPK differentially regulate muscle triglyceride content via Perilipin 3Chaudhuri, Rima; Fazakerley, Daniel; Hoffman, Nolan; James, David; Krycer, James; Parker, Benjamin Leo; Thomas, Kristen; Fritzen, Andreas; Jeppesen, Jacob; Kiens, Bente; Kleinert, Maximillian; Richter, Erik A; Ruegg, Markus A; Schjerling, Peter; Serup, Annette; Sylow Hansen, Lykke; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; School of Life and Environmental Sciences (SOLES); Molecular Bioscience; Molecular Bioscience; School of Life and Environmental Sciences (SOLES)mTORC2 and AMPK differentially regulate muscle triglyceride content via Perilipin 3, Molecular Metabolism, vol.5, 8, 2016,pp 646-655
2016mTORC2 and AMPK differentially regulate muscle triglyceride content via Perilipin 3Chaudhuri, Rima; Fazakerley, Daniel; Hoffman, Nolan; James, David; Krycer, James; Parker, Benjamin Leo; Thomas, Kristen; Fritzen, Andreas; Jeppesen, Jacob; Kiens, Bente; Kleinert, Maximillian; Richter, Erik A; Ruegg, Markus A; Schjerling, Peter; Serup, Annette; Sylow Hansen, Lykke; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; School of Life and Environmental Sciences (SOLES); Molecular Bioscience; Molecular Bioscience; School of Life and Environmental Sciences (SOLES)mTORC2 and AMPK differentially regulate muscle triglyceride content via Perilipin 3, Molecular Metabolism, vol.5, 8, 2016,pp 646-655
2015PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modificationChaudhuri, Rima; Hoffman, Nolan; James, David; Parker, Benjamin Leo; Stoeckli, Jacqueline; Yang, Jean Yee Hwa; Hill, Adam; Humphrey, Sean J; Sadrieh, Arash; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; Mathematics & StatisticsPhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modification, BMC Genomics, vol.16, 1, 2015,pp 1-14
2015Proteomic Analysis of GLUT4 Storage Vesicles Reveals Tumour Suppressor Candidate 5 (TUSC5) as a Novel Regulator of Insulin Action in AdipocytesBurchfield, James; Chaudhuri, Rima; Fazakerley, Daniel; James, David; Krycer, James; Meoli, Christopher; Naghiloo, Sheyda; Parker, Benjamin Leo; Stoeckli, Jacqueline; Thomas, Kristen; Holman, Geoffrey David; Koumanov, Francoise; Murrow, Beverley; Prior, Matthew; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; Charles Perkins CentreProteomic Analysis of GLUT4 Storage Vesicles Reveals Tumour Suppressor Candidate 5 (TUSC5) as a Novel Regulator of Insulin Action in Adipocytes, The Journal of Biological Chemistry, vol.290, 39, 2015,pp 23528-23542
2016Skeletal Muscle and Plasma Lipidomic Signatures of Insulin Resistance and Overweight/Obesity in HumansChaudhuri, Rima; James, David; Chisholm, Donald J; Christopher, Michael; Coster, Adelle; Gagnon-Bartsch, Johann; Greenfield, Jerry R; Meikle, Peter; Samocha-Bonet, Dorit; Tonks, Katherine; Xu, Aimin; Molecular Bioscience; School of Life and Environmental Sciences (SOLES)Skeletal Muscle and Plasma Lipidomic Signatures of Insulin Resistance and Overweight/Obesity in Humans, Obesity, vol.24, 4, 2016,pp 908-916
2016Skeletal Muscle and Plasma Lipidomic Signatures of Insulin Resistance and Overweight/Obesity in HumansChaudhuri, Rima; James, David; Chisholm, Donald J; Christopher, Michael; Coster, Adelle; Gagnon-Bartsch, Johann; Greenfield, Jerry R; Meikle, Peter; Samocha-Bonet, Dorit; Tonks, Katherine; Xu, Aimin; Molecular Bioscience; School of Life and Environmental Sciences (SOLES)Skeletal Muscle and Plasma Lipidomic Signatures of Insulin Resistance and Overweight/Obesity in Humans, Obesity, vol.24, 4, 2016,pp 908-916
2017Skeletal muscle extracellular matrix remodeling after short-term overfeeding in healthy humansChaudhuri, Rima; Tam, Charmaine; Heilbronn, Leonie; Hutchison, Amy; Samocha-Bonet, Dorit; School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES)Skeletal muscle extracellular matrix remodeling after short-term overfeeding in healthy humans, Metabolism: Clinical and Experimental, vol.67, N/A, 2017,pp 26-30
2015Targeted phosphoproteomics of insulin signaling using data-independent acquisition mass spectrometryChaudhuri, Rima; James, David; Ma, Xiuquan; Parker, Benjamin Leo; Yang, Guang; Humphrey, Sean J; Peterman, Scott; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; Molecular Bioscience; Molecular BioscienceTargeted phosphoproteomics of insulin signaling using data-independent acquisition mass spectrometry, Science Signaling, vol.8, 380, 2015,pp 1-8
2016Unraveling Kinase Activation Dynamics Using Kinase-Substrate Relationships from Temporal Large-Scale Phosphoproteomics StudiesChaudhuri, Rima; Domanova, Westa; Fazakerley, Daniel; James, David; Krycer, James; Kuncic, Zdenka; Vafaee, Fatemeh; Humphrey, Sean J; Yang, Pengyi; Molecular Bioscience; Physics; Molecular Bioscience; School of Life and Environmental Sciences (SOLES); Molecular Bioscience; Physics; Mathematics & StatisticsUnraveling Kinase Activation Dynamics Using Kinase-Substrate Relationships from Temporal Large-Scale Phosphoproteomics Studies, PloS One, vol.11, 6, 2016,pp 1-14