Browsing by Author Ritchie, William

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Issue DateTitleAuthor(s)Citation
2009Conserved expression patterns predict microRNA targetsFlamant, Stephane; Rajasekhar, Megha; Rasko, John; Ritchie, William; Central Clinical School: Medicine; Central Clinical School: Centenary Institute; Central Clinical School: Centenary Institute; Central Clinical School: Centenary InstituteConserved expression patterns predict microRNA targets, PLoS Computational Biology, vol.5, 9, 2009,pp e1000513 - 1-e1000513 - 8
2012Defining and providing robust controls for microRNA predictionGao, Dadi; Rasko, John; Ritchie, William; Central Clinical School: Medicine; Central Clinical School: Centenary Institute; Central Clinical School: Centenary InstituteDefining and providing robust controls for microRNA prediction, Bioinformatics, vol.28, 8, 2012,pp 1058-1061
2016A dynamic intron retention program in the mammalian megakaryocyte and erythrocyte lineagesMiddleton, Robert; Rasko, John; Ritchie, William; Schmitz, Ulf; Wong, Justin; An, Xiuli; Blobel, Gerd; Edwards, Christopher; Mohandas, Narla; Medicine Faculty Office; Central Clinical School: Centenary Institute; Central Clinical School: Centenary Institute; Central Clinical School: Centenary Institute; Central Clinical School: Centenary InstituteA dynamic intron retention program in the mammalian megakaryocyte and erythrocyte lineages, Blood, vol.127, 17, 2016,pp e24-e34
2014Genome-wide characterization of the routes to pluripotencyMiddleton, Robert; Rasko, John; Ritchie, William; Benevento, Marco; Clancy, Jennifer L; Cloonan, Nicole; Corso, Andrew J; et al, Various; Hussein, Samer M; Lee, Dong-Sung; Li, Mira; Mosbergen, Rowland; Munoz, Javier; Puri, Mira C; Tonge, Peter D; Wood, David; Medicine Faculty Office; Central Clinical School: Centenary Institute; Central Clinical School: Centenary InstituteGenome-wide characterization of the routes to pluripotency, Nature, vol.516, 7530, 2014,pp 198-206
2012Global MicroRNA Profiling of the Mouse Ventricles during Development of Severe Hypertrophic Cardiomyopathy and Heart FailureBagnall, Richard; Semsarian, Chris; Shephard, Rhian; Tsoutsman, Tatiana; Ritchie, William; Central Clinical School: Medicine; Central Clinical School: Centenary Institute; Central Clinical School: Centenary Institute; Central Clinical School: Centenary InstituteGlobal MicroRNA Profiling of the Mouse Ventricles during Development of Severe Hypertrophic Cardiomyopathy and Heart Failure, PLoS One, vol.7, 9, 2012,pp 1-8
2016HIF-1α and rapamycin act as gerosuppressant in multiple myeloma cells upon genotoxic stressRitchie, William; Alania, Julien; Cahu, Julie; Coudrea, Clemence; Marsaud, Veronique; Sola, Brigitt; Central Clinical School: Centenary InstituteHIF-1α and rapamycin act as gerosuppressant in multiple myeloma cells upon genotoxic stress, Cell Cycle, vol.15, 16, 2016,pp 2174-2182
2014Identification of nuclear-enriched miRNAs during mouse granulopoiesisGao, Dadi; Gonzalez, Maria; Holst, Jeffrey; Lau, Katherine; Rasko, John; Ritchie, William; Wong, Justin; Choudhary, Anupma; Taft, Ryan J; Central Clinical School: Medicine; Medicine; Central Clinical School: Centenary Institute; Western Clinical School: Westmead Millennium Institute; Central Clinical School: Centenary Institute; Central Clinical School: Centenary Institute; Central Clinical School: Centenary InstituteIdentification of nuclear-enriched miRNAs during mouse granulopoiesis, Journal of Hematology & Oncology, vol.7, 1, 2014,pp 1-15
2016Intron retention in mRNA: No longer nonsense: Known and putative roles of intron retention in normal and disease biologyAu, Amy; Rasko, John; Ritchie, William; Wong, Justin; Northern Clinical School: Kolling Institute; Central Clinical School: Centenary Institute; Central Clinical School: Centenary Institute; Central Clinical School: Centenary InstituteIntron retention in mRNA: No longer nonsense: Known and putative roles of intron retention in normal and disease biology, BioEssays, vol.38, 1, 2016,pp 41-49
2017IRFinder: Assessing the impact of intron retention on mammalian gene expressionAu, Amy; Rasko, John; Wong, Justin; Bomane, A; Cosson, B; Eyras, E; Gao, D; Middleton, R; Ritchie, William; Singh, B; Thomas, Aubin; Northern Clinical School: Kolling Institute; Central Clinical School: Centenary Institute; Central Clinical School: Centenary InstituteIRFinder: Assessing the impact of intron retention on mammalian gene expression, Genome Biology, vol.18, 1, 2017,pp 1-11
2010Micro-RNA response to imatinib mesylate in patients with chronic myeloid leukemiaHolst, Jeffrey; Rasko, John; Ritchie, William; Bonnet, Marie-Laure; Chomel, Jean-Claude; Flamant, Stéphane; Guilhot, François; Guilhot, Joëlle; Turhan, Ali; Central Clinical School: Centenary Institute; Central Clinical School: Centenary Institute; Central Clinical School: Centenary InstituteMicro-RNA response to imatinib mesylate in patients with chronic myeloid leukemia, Haematologica: the hematology journal, vol.95, 8,pp 1325-1333
2013MicroRNA Target Prediction and ValidationRasko, John; Ritchie, William; Flamant, Stephane; Central Clinical School: Centenary Institute; Central Clinical School: Centenary InstituteMicroRNA Target Prediction and Validation in MicroRNA Cancer Regulation: Advanced Concepts, Bioinformatics and Systems Biology Tools, Springer, 2013, pp. 39-53
2009mimiRNA: a microRNA expression profiler and classification resource designed to identify functional correlations between microRNAs and their targetsFlamant, Stephane; Rasko, John; Ritchie, William; Central Clinical School: Medicine; Central Clinical School: Centenary Institute; Central Clinical School: Centenary InstitutemimiRNA: a microRNA expression profiler and classification resource designed to identify functional correlations between microRNAs and their targets, Bioinformatics, vol.26, 2, 2009,pp 223-227
2013miREval 2.0: a web tool for simple microRNA prediction in genome sequencesGao, Dadi; Rasko, John; Ritchie, William; Middleton, Robert; Central Clinical School: Medicine; Central Clinical School: Centenary Institute; Central Clinical School: Centenary InstitutemiREval 2.0: a web tool for simple microRNA prediction in genome sequences, Bioinformatics, vol.29, 24, 2013,pp 3225-3226
2010Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoansHolst, Jeffrey; Rasko, John; Ritchie, William; Degnam, Bernard S; Korbie, Darren J; Mattick, John S; Mercer, Timothy R; Nahkuri, Satu; Oey, Harald; Rokhsar, Daniel S; Simons, Cas; Taft, Ryan J; Wong, Justin J-L; Central Clinical School: Centenary Institute; Central Clinical School: Centenary Institute; Central Clinical School: Centenary InstituteNuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans, Nature Structural and Molecular Biology, vol.17, 8, 2010,pp 1030-1035
2013Orchestrated Intron Retention Regulates Normal Granulocyte DifferentiationBaidya, Kinsha; Bailey, Charles; Gao, Dadi; Gonzalez, Maria; Holst, Jeffrey; Khoo, Teh-Liane; Pinello, Natalia; Rasko, John; Ritchie, William; Thoeng, Annora; Wong, Justin; Ebner, Olivia; Huang, Yizhou; Selbach, Matthias; Wong, Jason Wing Hon; Medicine; Central Clinical School: Centenary Institute; Central Clinical School: Medicine; Medicine; Central Clinical School: Centenary Institute; Central Clinical School: Medicine; Medicine; Central Clinical School: Centenary Institute; Central Clinical School: Centenary Institute; School of Medical Sciences: Physiology; Central Clinical School: Centenary InstituteOrchestrated Intron Retention Regulates Normal Granulocyte Differentiation, Cell, vol.154, 3, 2013,pp 583-595
2016RBM3 regulates temperature sensitive miR-142-5p and miR-143 (thermomiRs), which target immune genes and control feverAu, Amy; Bailey, Charles; Feng, Yue; Gao, Dadi; Gordon, J; Holst, Jeffrey; Kwok, Chau-To; Lau, Katherine; Middleton, Robert; Nguyen, Trung V; Pinello, Natalia; Rasko, John; Ritchie, William; Schmitz, Ulf; Thoeng, Annora; Wong, Justin; Northern Clinical School: Kolling Institute; Central Clinical School: Centenary Institute; Central Clinical School: Centenary Institute; Central Clinical School: Medicine; Central Clinical School: Centenary Institute; Central Clinical School: Centenary Institute; Central Clinical School: Centenary Institute; Western Clinical School: Westmead Institute for Medical Res; Medicine Faculty Office; Central Clinical School: Centenary Institute; Medicine; Central Clinical School: Centenary Institute; Central Clinical School: Centenary Institute; Central Clinical School: Centenary Institute; School of Medical Sciences: Physiology; Central Clinical School: Centenary InstituteRBM3 regulates temperature sensitive miR-142-5p and miR-143 (thermomiRs), which target immune genes and control fever, Nucleic Acids Research, vol.44, 6, 2016,pp 2888-2897
2015Real-time tracking of cell cycle progression during CD8+ effector and memory T-cell differentiationRitchie, William; Weninger, Wolfgang; Cavanagh, Lois; Doi, Atsushi; Hodgkin, Philip; Kanagawa, Osami; Kinjyo, Ichiko; Miyawaki, Atsushi; Mrass, Paulus; Qin, Jim; Sakaue-Sawano, Asako; Tan, Sioh-Yang; Tomura, Michio; Wellard, Cameron; Central Clinical School: Centenary Institute; Central Clinical School: Centenary InstituteReal-time tracking of cell cycle progression during CD8+ effector and memory T-cell differentiation, Nature Communications, vol.6, N/A, 2015,pp 1-13
2014Refining microRNA target predictions: sorting the wheat from the chaffRasko, John; Ritchie, William; Central Clinical School: Centenary Institute; Central Clinical School: Centenary InstituteRefining microRNA target predictions: sorting the wheat from the chaff, Biochemical and Biophysical Research Communications, vol.445, 4, 2014,pp 780-784
2014A Systems Biology Approach to the Analysis of Subset-Specific Responses to Lipopolysaccharide in Dendritic CellsFazekas de St Groth, Barbara Denise; Guy, Tom; Hancock, David Graeme; Shklovskaya, Elena; Falsafi, Reza; Fjell, Chris; Hancock, Robert EW; Ritchie, William; Central Clinical School: Centenary Institute; Central Clinical School: Centenary Institute; Central Clinical School: Centenary Institute; Central Clinical School: Centenary InstituteA Systems Biology Approach to the Analysis of Subset-Specific Responses to Lipopolysaccharide in Dendritic Cells, PLoS One, vol.9, 6, 2014,pp 1-16
2013Targeting Amino Acid Transport in Metastatic Castration-Resistant Prostate Cancer: Effects on Cell Cycle, Cell Growth, and Tumor DevelopmentBailey, Charles; Feng, Yue; Holst, Jeffrey; Metierre, Cynthia; Rasko, John; Ritchie, William; Tiffen, Jessamy; Wang, Kevin Qian; Buchanan, Grant; Fazli, Ladan; Gleave, Martin; Lehman, Melanie; Li, Estelle; Nelson, Colleen; Central Clinical School: Centenary Institute; Central Clinical School: Centenary Institute; Central Clinical School: Centenary Institute; Central Clinical School: Centenary Institute; Central Clinical School: Centenary Institute; Central Clinical School: Centenary Institute; Central Clinical School: Centenary Institute; Central Clinical School: Centenary InstituteTargeting Amino Acid Transport in Metastatic Castration-Resistant Prostate Cancer: Effects on Cell Cycle, Cell Growth, and Tumor Development, Journal of the National Cancer Institute, vol.105, 19, 2013,pp 1463-1473