Browsing by Author Octavia, Sophie

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Issue DateTitleAuthor(s)Citation
2017Characterisation of the Bordetella pertussis secretome under different mediaSintchenko, Vitali; Lan, Ruiting; Luu, Laurence Don Wai; Octavia, Sophie; Raftery, Mark; Zhong, Ling; Western Clinical School: Medicine (Westmead)Characterisation of the Bordetella pertussis secretome under different media, Journal of Proteomics, vol.158, N/A, 2017,pp 43-51
2017Comparative genomics of Australian and international isolates of Salmonella Typhimurium: Correlation of core genome evolution with CRISPR and prophage profilesSintchenko, Vitali; Fu, Songzhe; Hiley, Lester; Lan, Ruiting; Octavia, Sophie; Tanaka, Mark; Westmead Clinical School: MedicineComparative genomics of Australian and international isolates of Salmonella Typhimurium: Correlation of core genome evolution with CRISPR and prophage profiles, Scientific Reports, vol.7, 9733, 2017,pp 1-12
2015Defining Core Genome of Salmonella enterica serovar Typhimurium for genomic surveillance and epidemiological typingSintchenko, Vitali; Fu, Songzhe; Lan, Ruiting; Octavia, Sophie; Tanaka, Mark; Western Clinical School: Medicine (Westmead)Defining Core Genome of Salmonella enterica serovar Typhimurium for genomic surveillance and epidemiological typing, Journal of Clinical Microbiology, vol.53, 8, 2015,pp 2530-2538
2015Delineating community outbreaks of Salmonella enterica serovar Typhimurium by use of whole-genome sequencing: insights into genomic variability within an outbreakSintchenko, Vitali; Kaur, Sandeep; Lan, Ruiting; Octavia, Sophie; Tanaka, Mark; Wang, Qinning; Western Clinical School: Medicine (Westmead)Delineating community outbreaks of Salmonella enterica serovar Typhimurium by use of whole-genome sequencing: insights into genomic variability within an outbreak, Journal of Clinical Microbiology, vol.53, 4, 2015,pp 1063-1071
2010Detection of Helicobacteraceae in Intestinal Biopsies of Children with Crohn's DiseaseDutt, Shoma; Stormon, Michael; Castano-Rodriguez, Natalia; Day, Andrew; Holmes, Julie; Kaakoush, Nadeem O.; Leach, Steven T.; Lemberg, Daniel A.; Magoffin, Annabel; Man, Si Ming; Mitchell, Hazel; Octavia, Sophie; O'Loughlin, E.V.; Zhang, Li; Children's Hospital Westmead: Paediatrics & Child Health; Children's Hospital Westmead: Paediatrics & Child HealthDetection of Helicobacteraceae in Intestinal Biopsies of Children with Crohn's Disease, Helicobacter (Oxford), vol.15, 6, 2010,pp 549-557
2010Evolution of Seventh Cholera Pandemic and Origin of 1991 Epidemic, Latin AmericaReeves, Peter; Lam, Connie; Lan, Ruiting; Octavia, Sophie; Wang, Lei; Molecular BioscienceEvolution of Seventh Cholera Pandemic and Origin of 1991 Epidemic, Latin America, Emerging Infectious Diseases, vol.16, 7, 2010,pp 1130-1132
2016Evolution of variable number tandem repeats and its relationship with genomic diversity in Salmonella typhimuriumSintchenko, Vitali; Fu, Songzhe; Lan, Ruiting; Octavia, Sophie; Tanaka, M; Tay, Chin Yen; Wang, Qinning; Western Clinical School: Medicine (Westmead)Evolution of variable number tandem repeats and its relationship with genomic diversity in Salmonella typhimurium, Frontiers in Microbiology, vol.7, N/A, 2016,pp 1-12
2012Genetic Relationships of Phage Types and Single Nucleotide Polymorphism Typing of Salmonella enterica Serovar TyphimuriumGilbert, Gwendolyn (Lyn); Reeves, Peter; Sintchenko, Vitali; Wang, Qinning; Lan, Ruiting; Octavia, Sophie; Pang, Stanley; Western Clinical School: Westmead Millennium Institute; Molecular Bioscience; Western Clinical School: Medicine (Westmead); Western Clinical School: Westmead Millennium InstituteGenetic Relationships of Phage Types and Single Nucleotide Polymorphism Typing of Salmonella enterica Serovar Typhimurium, Journal of Clinical Microbiology, vol.50, 3, 2012,pp 727-734
2016Genomic dissection of Australian Bordetella pertussis isolates from the 2008-2012 epidemicGilbert, Gwendolyn (Lyn); McIntyre, Peter; Sintchenko, Vitali; Wood, Nicholas James; Kaur, Sandeep; Keil, Anthony; Lan, Ruiting; Marshall, Helen S; Octavia, Sophie; Safarchi, Azadeh; Wu, Sunny Z; Western Clinical School: Westmead Institute for Medical Res; Childrens Hospital Westmead: Paediatrics & Child Health; Western Clinical School: Medicine (Westmead); Childrens Hospital Westmead: Paediatrics & Child HealthGenomic dissection of Australian Bordetella pertussis isolates from the 2008-2012 epidemic, Journal of Infection, vol.72, 4, 2016,pp 468-477
2013Genomic diversity and adaptation of Salmonella enterica serovar Typhimurium from analysis of six genomes of different phage typesReeves, Peter; Feng, Lu; Lan, Ruiting; Liu, Bin; Octavia, Sophie; Pang, Stanley; Wang, Lei; Molecular BioscienceGenomic diversity and adaptation of Salmonella enterica serovar Typhimurium from analysis of six genomes of different phage types, BMC Genomics, vol.14, 1, 2013,pp 1-12
2017Genomic heterogeneity of Salmonella enterica serovar Typhimurium bacteriuria from chronic infectionSintchenko, Vitali; Lan, Ruiting; Octavia, Sophie; Tanaka, M; Wang, Qinning; Western Clinical School: Medicine (Westmead)Genomic heterogeneity of Salmonella enterica serovar Typhimurium bacteriuria from chronic infection, Infection, Genetics and Evolution, vol.51, N/A, 2017,pp 17-20
2015Genomic Variability of Serial Human Isolates of Salmonella enterica Serovar Typhimurium Associated with Prolonged CarriageSintchenko, Vitali; Lang, R; Octavia, Sophie; Tanaka, M; Wang, Qinning; Western Clinical School: Medicine (Westmead)Genomic Variability of Serial Human Isolates of Salmonella enterica Serovar Typhimurium Associated with Prolonged Carriage, Journal of Clinical Microbiology, vol.53, 11, 2015,pp 3507-3514
2014Investigating genome reduction of Bordetella pertussis using a multiplex PCR-based reverse line blot assay (mPCR/RLB)Gilbert, Gwendolyn (Lyn); Sintchenko, Vitali; Lam, Connie; Lan, Ruiting; Octavia, Sophie; Western Clinical School: Westmead Millennium Institute; Western Clinical School: Medicine (Westmead)Investigating genome reduction of Bordetella pertussis using a multiplex PCR-based reverse line blot assay (mPCR/RLB), BMC Research Notes, vol.7, 1, 2014,pp 1-8
2012Multi-locus variable number tandem repeat analysis of 7th pandemic Vibrio choleraeReeves, Peter; Lam, Connie; Lan, Ruiting; Octavia, Sophie; Molecular BioscienceMulti-locus variable number tandem repeat analysis of 7th pandemic Vibrio cholerae, BMC Microbiology, vol.12, N/A, 2012,pp 1-11
2015Pertactin negative Bordetella pertussis demonstrates higher fitness under vaccine selection pressure in a mixed infection modelMcIntyre, Peter; Sintchenko, Vitali; Wood, Nicholas James; Lan, Ruiting; Luu, Laurence Don Wai; Marshall, Helen; Octavia, Sophie; Safarchi, Azadeh; Tay, Chin Yen; Childrens Hospital Westmead: Paediatrics & Child Health; Western Clinical School: Medicine (Westmead); Childrens Hospital Westmead: Paediatrics & Child HealthPertactin negative Bordetella pertussis demonstrates higher fitness under vaccine selection pressure in a mixed infection model, Vaccine, vol.33, 46, 2015,pp 6277-6281
2013Population Structure and Evolution of Non-O1/Non-O139 Vibrio cholerae by Multilocus Sequence TypingAhsan, Sunjukta; Reeves, Peter; Salim, Anna; Kurniawan, Jacob; Lam, Connie; Lan, Ruiting; Leung, Queenie; Nair, G. Balakrish; Octavia, Sophie; Molecular Bioscience; Molecular Bioscience; Molecular BiosciencePopulation Structure and Evolution of Non-O1/Non-O139 Vibrio cholerae by Multilocus Sequence Typing, PLoS One, vol.8, 6, 2013,pp 1-13
2014Rapid Increase in Pertactin-deficient Bordetella pertussis Isolates, AustraliaGilbert, Gwendolyn (Lyn); Sintchenko, Vitali; Wood, Nicholas James; et al, Various; Guiso, Nicole; Keil, Anthony; Lam, Connie; Marshall, Helen S; McIntyre, Peter; Octavia, Sophie; Ricafort, Lawrence; Western Clinical School: Westmead Millennium Institute; Western Clinical School: Medicine (Westmead); Childrens Hospital Westmead: Paediatrics & Child HealthRapid Increase in Pertactin-deficient Bordetella pertussis Isolates, Australia, Emerging Infectious Diseases, vol.20, 4, 2014,pp 626-633
2016The relationship between Bordetella pertussis genotype and clinical severity in Australian children with pertussisMcIntyre, Peter; Quinn, Helen; Sintchenko, Vitali; Wood, Nicholas James; Blyth, Christopher; Clarke, Michelle; Giles, Lynne C; Hanly, Gabrielle; Hill, Verity; Lan, Ruiting; Marshall, Helen; Octavia, Sophie; Childrens Hospital Westmead: Paediatrics & Child Health; Children's Hospital Westmead: Childrens Medical Research Ins; Western Clinical School: Medicine (Westmead); Childrens Hospital Westmead: Paediatrics & Child HealthThe relationship between Bordetella pertussis genotype and clinical severity in Australian children with pertussis, Journal of Infection, vol.72, 2, 2016,pp 171-178
2012Selection and emergence of pertussis toxin promoter ptxP3 allele in the evolution of Bordetella pertussisGilbert, Gwendolyn (Lyn); Sintchenko, Vitali; Bahrame, Zahra; Lam, Connie; Lan, Ruiting; Octavia, Sophie; Western Clinical School: Westmead Millennium Institute; Western Clinical School: Medicine (Westmead)Selection and emergence of pertussis toxin promoter ptxP3 allele in the evolution of Bordetella pertussis, Infection, Genetics and Evolution, vol.12, 2, 2012,pp 492-495
2016Whole genome sequencing of Salmonella Typhimurium illuminates distinct outbreaks caused by an endemic multi-locus variable number tandem repeat analysis type in Australia, 2014Holmes, Nadine; Sintchenko, Vitali; Sotomayor Castillo, Cristina Fabiola; Wang, Qinning; Furlong, Catriona; Howard, Peter; Lan, Ruiting; Octavia, Sophie; Phillips, Anastasia; Ward, Kate; Central Clinical School: Medicine; Western Clinical School: Medicine (Westmead); Western Clinical School: Westmead Institute for Medical Res; Western Clinical School: Westmead Institute for Medical ResWhole genome sequencing of Salmonella Typhimurium illuminates distinct outbreaks caused by an endemic multi-locus variable number tandem repeat analysis type in Australia, 2014, BMC Microbiology, vol.16, 1, 2016,pp 1-9