Browsing by Author Lan, Ruiting

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Issue DateTitleAuthor(s)Citation
2006Adaptation of multilocus sequencing for studying variation within a major clone: evolutionary relationships of Salmonella enterica serovar Typhimurium.Hu, Honghua; Reeves, Peter; Lan, Ruiting; Infectious Diseases; Molecular & Microbial BioscienAdaptation of multilocus sequencing for studying variation within a major clone: evolutionary relationships of Salmonella enterica serovar Typhimurium., Genetics: a periodical record of investigations bearing on heredity and variation, vol.172,(2),2006,pp 743-750
2003AFLP analysis of Salmonella enterica serovar Typhimurium isolates of phage types DT 9 and DT 135: diversity within phage types and its epidemiological significanceDavison, Ariane; Lan, Ruiting; Reeves, Peter; Ward, Linda R; School of Medical Sciences: Pathology; Science Faculty Admin; Molecular & Microbial BioscienAFLP analysis of Salmonella enterica serovar Typhimurium isolates of phage types DT 9 and DT 135: diversity within phage types and its epidemiological significance, Microbes and Infection, vol.5,(10),2003,pp 841-850
2007Amplified Fragment Length Polymorphism Analysis of Salmonella entericaReeves, Peter; Lan, Ruiting; Molecular & Microbial BioscienAmplified Fragment Length Polymorphism Analysis of Salmonella enterica in Salmonella: Methods and Protocols, Humana Press Inc., 2007, pp. 119-132
2010Bordetella pertussis clones identified by multilocus variable-number tandem-repeat analysisGilbert, Gwendolyn; Reeves, Peter; Sintchenko, Vitali; Chan, Wai-Fong; Kurniawan, Jacob; Lan, Ruiting; Maharjan, Ram p; Mooi, F. R.; Western Clinical School: Westmead Millennium Institute; School of Molecular Bioscience; Western Clinical School: Medicine (Westmead)Bordetella pertussis clones identified by multilocus variable-number tandem-repeat analysis, Emerging Infectious Diseases, vol.16, 2,pp 297-300
2017Characterisation of the Bordetella pertussis secretome under different mediaSintchenko, Vitali; Lan, Ruiting; Luu, Laurence Don Wai; Octavia, Sophie; Raftery, Mark; Zhong, Ling; Western Clinical School: Medicine (Westmead)Characterisation of the Bordetella pertussis secretome under different media, Journal of Proteomics, vol.158, N/A, 2017,pp 43-51
2017Comparative genomics of Australian and international isolates of Salmonella Typhimurium: Correlation of core genome evolution with CRISPR and prophage profilesSintchenko, Vitali; Fu, Songzhe; Hiley, Lester; Lan, Ruiting; Octavia, Sophie; Tanaka, Mark; Westmead Clinical School: MedicineComparative genomics of Australian and international isolates of Salmonella Typhimurium: Correlation of core genome evolution with CRISPR and prophage profiles, Scientific Reports, vol.7, 9733, 2017,pp 1-12
2003Comparison of two major forms of the Shigella virulence plasmid pINV: Positive selection is a major force driving the divergenceLan, Ruiting; Reeves, Peter; Stevenson, Gordon; Science Faculty Admin; Molecular & Microbial Bioscien; MicrobiologyComparison of two major forms of the Shigella virulence plasmid pINV: Positive selection is a major force driving the divergence, Infection and Immunity, vol.71,(11),2003,pp 6298-6306
2011Computational Bacterial Genome-Wide Analysis of Phylogenetic Profiles Reveals Potential Virulence Genes of Streptococcus agalactiaeGilbert, Gwendolyn; Kong, Fanrong; Sintchenko, Vitali; Coiera, Enrico; Lan, Ruiting; Lin, Frank; Western Clinical School: Westmead Millennium Institute; Western Clinical School: Medicine (Westmead); Western Clinical School: Medicine (Westmead)Computational Bacterial Genome-Wide Analysis of Phylogenetic Profiles Reveals Potential Virulence Genes of Streptococcus agalactiae, PLoS One, vol.6, 4, 2011,pp e17964-1-e17964-10
2015Defining Core Genome of Salmonella enterica serovar Typhimurium for genomic surveillance and epidemiological typingSintchenko, Vitali; Fu, Songzhe; Lan, Ruiting; Octavia, Sophie; Tanaka, Mark; Western Clinical School: Medicine (Westmead)Defining Core Genome of Salmonella enterica serovar Typhimurium for genomic surveillance and epidemiological typing, Journal of Clinical Microbiology, vol.53, 8, 2015,pp 2530-2538
2015Delineating community outbreaks of Salmonella enterica serovar Typhimurium by use of whole-genome sequencing: insights into genomic variability within an outbreakSintchenko, Vitali; Kaur, Sandeep; Lan, Ruiting; Octavia, Sophie; Tanaka, Mark; Wang, Qinning; Western Clinical School: Medicine (Westmead)Delineating community outbreaks of Salmonella enterica serovar Typhimurium by use of whole-genome sequencing: insights into genomic variability within an outbreak, Journal of Clinical Microbiology, vol.53, 4, 2015,pp 1063-1071
2010Derivation of Escherichia coli O157:H7 from Its O55:H7 PrecursorReeves, Peter; Beutin, Lothar; Feng, Lu; Lan, Ruiting; Li, Xiaomin; Liu, Bin; Ren, Yan; Wang, Lei; Xu, Jianguo; Zhou, Zhemin; School of Molecular BioscienceDerivation of Escherichia coli O157:H7 from Its O55:H7 Precursor, PLoS One, vol.5, 1,pp e8700 - 1-e8700 - 14
2002Escherichia coli in disguise: molecular origins of ShigellaLan, Ruiting; Reeves, Peter; Science Faculty Admin; School of Molecular BioscienceEscherichia coli in disguise: molecular origins of Shigella, Microbes and Infection, vol.4, 11,pp 1125-1132
2010Evolution of Seventh Cholera Pandemic and Origin of 1991 Epidemic, Latin AmericaReeves, Peter; Lam, Connie; Lan, Ruiting; Octavia, Sophie; Wang, Lei; Molecular BioscienceEvolution of Seventh Cholera Pandemic and Origin of 1991 Epidemic, Latin America, Emerging Infectious Diseases, vol.16, 7, 2010,pp 1130-1132
2016Evolution of variable number tandem repeats and its relationship with genomic diversity in Salmonella typhimuriumSintchenko, Vitali; Fu, Songzhe; Lan, Ruiting; Octavia, Sophie; Tanaka, M; Tay, Chin Yen; Wang, Qinning; Western Clinical School: Medicine (Westmead)Evolution of variable number tandem repeats and its relationship with genomic diversity in Salmonella typhimurium, Frontiers in Microbiology, vol.7, N/A, 2016,pp 1-12
2005Evolutionary changes of the flhDC flagellar master operon in Shigella strains.Reeves, Peter; Tominaga, A; Lan, Ruiting; School of Molecular Bioscience; School of Molecular BioscienceEvolutionary changes of the flhDC flagellar master operon in Shigella strains., Journal of Bacteriology, vol.187,(12),2005,pp 4295-4302
2002Fluorescent amplified fragment length polymorphism analysis of Salmonella enterica Serovar Typhimurium reveals phage-type-specific markers and potential for microarray typingHu, Honghua; Lan, Ruiting; Reeves, Peter; Infectious Diseases; Science Faculty Admin; Molecular & Microbial BioscienFluorescent amplified fragment length polymorphism analysis of Salmonella enterica Serovar Typhimurium reveals phage-type-specific markers and potential for microarray typing, Journal of Clinical Microbiology, vol.40,(9),2002,pp 3406-3415
2012Genetic Relationships of Phage Types and Single Nucleotide Polymorphism Typing of Salmonella enterica Serovar TyphimuriumGilbert, Gwendolyn (Lyn); Reeves, Peter; Sintchenko, Vitali; Wang, Qinning; Lan, Ruiting; Octavia, Sophie; Pang, Stanley; Western Clinical School: Westmead Millennium Institute; Molecular Bioscience; Western Clinical School: Medicine (Westmead); Western Clinical School: Westmead Millennium InstituteGenetic Relationships of Phage Types and Single Nucleotide Polymorphism Typing of Salmonella enterica Serovar Typhimurium, Journal of Clinical Microbiology, vol.50, 3, 2012,pp 727-734
2008Genome-wide analysis of single nucleotide polymorphisms in Bordetella pertussis using comparative genomic sequencingGilbert, Gwendolyn (Lyn); Reeves, Peter; Sintchenko, Vitali; Gu, Chong; Lan, Ruiting; Maharjan, Ram p; Western Clinical School: Westmead Millennium Institute; Molecular Bioscience; Western Clinical School: Medicine (Westmead)Genome-wide analysis of single nucleotide polymorphisms in Bordetella pertussis using comparative genomic sequencing, Research in Microbiology, vol.159, N/A, 2008,pp 602-608
2016Genomic dissection of Australian Bordetella pertussis isolates from the 2008-2012 epidemicGilbert, Gwendolyn (Lyn); McIntyre, Peter; Sintchenko, Vitali; Wood, Nicholas James; Kaur, Sandeep; Keil, Anthony; Lan, Ruiting; Marshall, Helen S; Octavia, Sophie; Safarchi, Azadeh; Wu, Sunny Z; Western Clinical School: Westmead Institute for Medical Res; Childrens Hospital Westmead: Paediatrics & Child Health; Western Clinical School: Medicine (Westmead); Childrens Hospital Westmead: Paediatrics & Child HealthGenomic dissection of Australian Bordetella pertussis isolates from the 2008-2012 epidemic, Journal of Infection, vol.72, 4, 2016,pp 468-477
2013Genomic diversity and adaptation of Salmonella enterica serovar Typhimurium from analysis of six genomes of different phage typesReeves, Peter; Feng, Lu; Lan, Ruiting; Liu, Bin; Octavia, Sophie; Pang, Stanley; Wang, Lei; Molecular BioscienceGenomic diversity and adaptation of Salmonella enterica serovar Typhimurium from analysis of six genomes of different phage types, BMC Genomics, vol.14, 1, 2013,pp 1-12