Browsing by Author Keich, Uri

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Showing results 1 to 16 of 16
Issue DateTitleAuthor(s)Citation
2016Accurate pairwise convolutions of non-negative vectors via FFTKeich, Uri; Wilson, Huon William; Mathematics & Statistics; Mathematics & StatisticsAccurate pairwise convolutions of non-negative vectors via FFT, Computational Statistics and Data Analysis, vol.101, N/A, 2016,pp 300-315
2017Accurate Small Tail Probabilities of Sums of iid Lattice-Valued Random Variables via FFTKeich, Uri; Wilson, Huon William; Mathematics & Statistics; Mathematics & StatisticsAccurate Small Tail Probabilities of Sums of iid Lattice-Valued Random Variables via FFT, Journal of Computational and Graphical Statistics, vol.26, 1, 2017,pp 223-229
2011Alignment Constrained SamplingKeich, Uri; Ng, Patrick; Mathematics & StatisticsAlignment Constrained Sampling, Journal of Computational Biology, vol.18, 2, 2011,pp 155-168
2010A Comprehensive Genome-Wide Map of Autonomously Replicating Sequences in a Naive GenomeKeich, Uri; Bhaskar, Anand; Chung, Shau Chee Claire; Lee, Chanmi; Liachko, Ivan; Tye, Bik K; Mathematics & StatisticsA Comprehensive Genome-Wide Map of Autonomously Replicating Sequences in a Naive Genome, PLoS Genetics, vol.6, 5,pp 1-12
2010Confidently Estimating the Number of DNA Replication OriginsKeich, Uri; Bhaskar, Anand; Mathematics & StatisticsConfidently Estimating the Number of DNA Replication Origins, Statistical Applications in Genetics and Molecular Biology, vol.9, 1,pp 1-21
2009Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAsKeich, Uri; Boor, Kathryn; Cartinhour, Samuel; Filiatrault, Melanie J; Oliver, Haley F; Orsi, Renato; Ponnala, Lalit; Sun, Qi; Wang, Wei; Wiedmann, Martin; Mathematics & StatisticsDeep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs, BMC Genomics, vol.10, N/A, 2009,pp 641-1-641-22
2013High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeastKeich, Uri; Dunham, Maitreya; Liachko, Ivan; Youngblood, Rachel; Mathematics & StatisticsHigh-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast, Genome Research, vol.23, 4, 2013,pp 698-704
2015Improved False Discovery Rate Estimation Procedure for Shotgun ProteomicsKeich, Uri; Kertesz-Farkas, Attila; Noble, William; Mathematics & StatisticsImproved False Discovery Rate Estimation Procedure for Shotgun Proteomics, Journal of Proteome Research, vol.14, 8, 2015,pp 3148-3161
2014Improving MEME via a two-tiered significance analysisKeich, Uri; Tanaka, Emi; Bailey, Timothy; Mathematics & Statistics; Mathematics & StatisticsImproving MEME via a two-tiered significance analysis, Bioinformatics, vol.30, 14, 2014,pp 1965-1973
2011Novel Features of ARS Selection in Budding Yeast Lachancea kluyveriKeich, Uri; Tanaka, Emi; Barrow, Jasmine; Cha, Eugene; Claire, Shau Chee; Cox, Katherine; Hallas, Lindsay; Inada, Maki; Kang, Gina; Liachko, Ivan; Liachko, Ivan; Pace, Heather; Seher, Arael; Tye, Bik K; Yang, Lu; Mathematics & Statistics; Mathematics & StatisticsNovel Features of ARS Selection in Budding Yeast Lachancea kluyveri, BMC Genomics, vol.12, 633, 2011,pp 1-18
2015On the importance of well-calibrated scores for identifying shotgun proteomics spectraKeich, Uri; Noble, William; Mathematics & StatisticsOn the importance of well-calibrated scores for identifying shotgun proteomics spectra, Journal of Proteome Research, vol.14, 2, 2015,pp 1147-1160
2017Progressive calibration and averaging for tandem mass spectrometry statistical confidence estimation: Why settle for a single decoy?Keich, Uri; Noble, William; Mathematics & StatisticsProgressive calibration and averaging for tandem mass spectrometry statistical confidence estimation: Why settle for a single decoy?, Lecture Notes in Computer Science (LNCS), vol.10229, N/A, 2017,pp 99-116
2015A Symmetric Length-Aware Enrichment TestKeich, Uri; Manescu, David; Mathematics & Statistics; Mathematics & StatisticsA Symmetric Length-Aware Enrichment Test, Lecture Notes in Computer Science (LNCS), vol.9029, N/A, 2015,pp 224-242
2016A symmetric length-aware enrichment testKeich, Uri; Manescu, David; Mathematics & Statistics; Mathematics & StatisticsA symmetric length-aware enrichment test, Journal of Computational Biology, vol.23, 6, 2016,pp 508-525
2015Tandem Mass Spectrum Identification via Cascaded SearchKeich, Uri; Kertesz-Farkas, Attila; Noble, William; Mathematics & StatisticsTandem Mass Spectrum Identification via Cascaded Search, Journal of Proteome Research, vol.14, 8, 2015,pp 3027-3038
2011Target-Decoy Approach and False Discovery Rate: When Things May Go WrongKeich, Uri; Bandeira, Nuno; Gupta, Nitin; Pevzner, Pavel A.; Mathematics & StatisticsTarget-Decoy Approach and False Discovery Rate: When Things May Go Wrong, Journal of the American Society for Mass Spectrometry, vol.22, N/A, 2011,pp 1111-1120