Browsing by Author Ho, Simon

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Issue DateTitleAuthor(s)Citation
2014Accounting for rate variation among lineages in comparative demographic analysesHo, Simon; Cook, Joseph A; Hope, Andrew; Malaney, Jason; Talbot, Sandra; Biological SciencesAccounting for rate variation among lineages in comparative demographic analyses, Evolution, vol.68, 9, 2014,pp 2689-2700
2014Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimatesDuchene, Sebastian; Ho, Simon; Holmes, Edward; Biological Sciences; Biological Sciences; Sydney Institute for Emerging Infectious Diseases and BiosecAnalyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates, Proceedings of the Royal Society B: Biological Sciences, vol.281, 1786, 2014,pp 1-7
2013Ancient DNA reveals that bowhead whale lineages survived Late Pleistocene climate change and habitat shiftsHo, Simon; Embling, Clare; Foote, Andrew D.; Garilao, Cristina; Gilbert, M Thomas P; Gregersen, Kristian; Higham, Thomas; Johansson, Friederike; Kaschner, K; Post, Klaas; Schultze, Sebastian; Stokowska, Catherine; Van Der Es, Henry; Willerslev, Eske; Biological SciencesAncient DNA reveals that bowhead whale lineages survived Late Pleistocene climate change and habitat shifts, Nature Communications, vol.4, N/A, 2013,pp 1-7
2016Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the AmericasHo, Simon; et al, Various; Fehren-Schmitz, Lars; Llamas, Bastien; Mallick, Swapan; Nordenfelt, Susanne; Richards, Stephen; Rohland, Nadin; Rohrlach, Adam; Soubrier, Julien; Valdiosera, Cristina; Valverde, Guido; School of Life and Environmental Sciences (SOLES)Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas, Science Advances, vol.2, 4, 2016,pp 1-10
2012Are pollen fossils useful for calibrating relaxed molecular clock dating of phylogenies? A comparative study using MyrtaceaeHo, Simon; Carter, Richard; Crisp, Michael; Popple, Lindsay W; Thornhill, Andrew; Biological SciencesAre pollen fossils useful for calibrating relaxed molecular clock dating of phylogenies? A comparative study using Myrtaceae, Molecular Phylogenetics and Evolution, vol.63, 1, 2012,pp 15-27
2013Australian and Pacific contributions to the genetic diversity of Norfolk Island feral chickensGongora, Jaime; Ho, Simon; Kraitsek, Spiridoula; Langford, Shannon; Baskerville, B; REPROGEN; Biological Sciences; Vet Science Faculty Admin; Vet Science FacultyAustralian and Pacific contributions to the genetic diversity of Norfolk Island feral chickens, BMC Genetics, vol.14, Article 91, 2013,pp 1-8
2011Bayesian estimation of substitution rates from ancient DNA sequences with low information contentHo, Simon; Barnes, Ian; Kolokotronis, Sergios Orestis; Lanfear, Robert; PHILLIPS, MATTHEW J.; Shapiro, Beth; Thomas, Jessica; Biological SciencesBayesian estimation of substitution rates from ancient DNA sequences with low information content, Systematic Biology, vol.60, 3, 2011,pp 366-375
2011A Bayesian Phylogenetic Method to Estimate Unknown Sequence AgesHo, Simon; Drummond, Alexei; Pybus, Oliver G; Rambaut, Andrew; Shapiro, Beth; Suchard, Marc; Biological SciencesA Bayesian Phylogenetic Method to Estimate Unknown Sequence Ages, Molecular Biology and Evolution, vol.28, 2, 2011,pp 879-887
2004The Biasing Effect Of Compositional Heterogeneity On Phylogenetic Estimates May Be UnderestimatedAbabneh, Faisal; Ho, Simon; Jermiin, Lars; Larkum, Anthony; Robinson, John; Mathematics & Statistics; Biological Sciences; Biological Sciences; Biological Sciences; Mathematics & StatisticsThe Biasing Effect Of Compositional Heterogeneity On Phylogenetic Estimates May Be Underestimated, Systematic Biology, vol.53,(4),2004,pp 638-643
2015Biogeographic calibrations for the molecular clockFoster, Charles; Ho, Simon; Jun Tong, K; Lo, Nathan; Ritchie, Andrew; Crisp, Michael; Biological Sciences; Biological Sciences; Biological Sciences; Biological Sciences; Biological SciencesBiogeographic calibrations for the molecular clock, Biology Letters, vol.11, 9, 2015,pp 1-7
2014The changing face of the molecular evolutionary clockHo, Simon; Biological SciencesThe changing face of the molecular evolutionary clock, Trends in Ecology and Evolution, vol.29, 9, 2014,pp 496-503
2014ClockstaR: choosing the number of relaxed-clock models in molecular phylogenetic analysisDuchene, Sebastian; Ho, Simon; Molak, Martyna Ewa; Biological Sciences; Biological Sciences; Biological SciencesClockstaR: choosing the number of relaxed-clock models in molecular phylogenetic analysis, Bioinformatics, vol.30, 7, 2014,pp 1017-1019
2015Comment on "Phylogenomics resolves the timing and pattern of insect evolution"Duchene, Sebastian; Ho, Simon; Jun Tong, K; Lo, Nathan; Biological Sciences; Biological Sciences; Biological Sciences; Biological SciencesComment on "Phylogenomics resolves the timing and pattern of insect evolution", Science, vol.349, 6427, 2015,pp 487-487
2013Comparative dating of Acacia: combining fossils and multiple phylogenies to infer ages of clades with poor fossil recordsHo, Simon; Cantrill, David; Miller, Joseph; Murphy, Daniel; Seigler, David; Biological SciencesComparative dating of Acacia: combining fossils and multiple phylogenies to infer ages of clades with poor fossil records, Australian Journal of Botany, vol.61, 6, 2013,pp 436-445
2013Complete mitochondrial genomes and a novel spatial genetic method reveal cryptic phylogeographical structure and migration patterns among brown bears in north-western EurasiaHo, Simon; Abramov, Alexei; Davison, John; Keis, Marju; Kojola, Ilpo; Mannil, Peep; Margus, Tonu; Remm, Jaanus; Saarma, Urmas; Saveljev, Alexander; Tammeleht, Egle; Tumanov, Igor; Biological SciencesComplete mitochondrial genomes and a novel spatial genetic method reveal cryptic phylogeographical structure and migration patterns among brown bears in north-western Eurasia, Journal of Biogeography, vol.40, 5, 2013,pp 915-927
2014Continuity of brown bear maternal lineages in northern England through the Last-glacial periodHo, Simon; Barnett, Ross; BÌ€radley, Daniel; Coxon, Peter; Edwards, Ceiridwen; Lord, Thomas; O'Connor, Terry; Biological SciencesContinuity of brown bear maternal lineages in northern England through the Last-glacial period, Quaternary Science Reviews, vol.96, N/A, 2014,pp 131-139
2016Cross-validation to select Bayesian hierarchical models in phylogeneticsDi Giallonardo, Francesca; Duchene, David; Duchene, Sebastian; Eden, John-Sebastian; Geoghegan, Jemma Louise; Ho, Simon; Holmes, Edward; Holt, Kathryn E; Biological Sciences; Biological Sciences; Biological Sciences; Biological Sciences; Biological Sciences; School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES)Cross-validation to select Bayesian hierarchical models in phylogenetics, BMC Evolutionary Biology, vol.16, 1, 2016,pp 1-8
2016Cross-validation to select Bayesian hierarchical models in phylogeneticsDi Giallonardo, Francesca; Duchene, David; Duchene, Sebastian; Eden, John-Sebastian; Geoghegan, Jemma Louise; Ho, Simon; Holmes, Edward; Holt, Kathryn E; Biological Sciences; Biological Sciences; Biological Sciences; Biological Sciences; Biological Sciences; School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES)Cross-validation to select Bayesian hierarchical models in phylogenetics, BMC Evolutionary Biology, vol.16, 1, 2016,pp 1-8
2014Cryptic diversity, diversification and vicariance in two species complexes of Tomocerus (Collembola, Tomoceridae) from ChinaHo, Simon; Luo, Yongzheng; Wang, B; Yu, D; Zhang, Feng; Zhu, Chaodong; Biological SciencesCryptic diversity, diversification and vicariance in two species complexes of Tomocerus (Collembola, Tomoceridae) from China, Zoologica Scripta, vol.43, 4, 2014,pp 393-404
2013Dating the origin and dispersal of hepatitis B virus infection in humans and primatesHo, Simon; Allain, Jean-Pierre; Belshaw, Robert; Hatzakis, Angelos; Magiorkinis, Emmanouil; Magiorkinis, Gkikas; Paraskevis, Dimitrios; Biological SciencesDating the origin and dispersal of hepatitis B virus infection in humans and primates, Hepatology, vol.57, 3, 2013,pp 908-916