Browsing by Author Duchene, Sebastian

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Issue DateTitleAuthor(s)Citation
201617th Century Variola Virus Reveals the Recent History of SmallpoxBuchmann, Jan; Duchene, Sebastian; Holmes, Edward; Duggan, Ana; Emery, Matthew; et al, Various; Golding, G. Brian; Humphreys, Margaret; Jankauskas, Rimantas; Marciniak, Stephanie; Perdomo, Maria; Piombino-Mascali, Dario; Poinar, Debi; Biological Sciences; Biological Sciences; School of Life and Environmental Sciences (SOLES)17th Century Variola Virus Reveals the Recent History of Smallpox, Current Biology, vol.26, 24, 2016,pp 3407-3412
201617th Century Variola Virus Reveals the Recent History of SmallpoxBuchmann, Jan; Duchene, Sebastian; Holmes, Edward; Duggan, Ana; Emery, Matthew; et al, Various; Golding, G. Brian; Humphreys, Margaret; Jankauskas, Rimantas; Marciniak, Stephanie; Perdomo, Maria; Piombino-Mascali, Dario; Poinar, Debi; Biological Sciences; Biological Sciences; School of Life and Environmental Sciences (SOLES)17th Century Variola Virus Reveals the Recent History of Smallpox, Current Biology, vol.26, 24, 2016,pp 3407-3412
2014Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimatesDuchene, Sebastian; Ho, Simon; Holmes, Edward; Biological Sciences; Biological Sciences; Sydney Institute for Emerging Infectious Diseases and BiosecAnalyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates, Proceedings of the Royal Society B: Biological Sciences, vol.281, 1786, 2014,pp 1-7
2016Benign Rabbit Caliciviruses Exhibit Evolutionary Dynamics Similar to Those of Their Virulent RelativesDuchene, Sebastian; Eden, John-Sebastian; Holmes, Edward; Kerr, Peter; Mahar, Jackie; Duckworth, J.A; Nicholson, Leila; Strive, Tanja; Ward, Vernon; Biological Sciences; Biological Sciences; School of Life and Environmental Sciences (SOLES); Molecular Bioscience; Biological SciencesBenign Rabbit Caliciviruses Exhibit Evolutionary Dynamics Similar to Those of Their Virulent Relatives, Journal of Virology, vol.90, 20, 2016,pp 9317-9329
2014ClockstaR: choosing the number of relaxed-clock models in molecular phylogenetic analysisDuchene, Sebastian; Ho, Simon; Molak, Martyna Ewa; Biological Sciences; Biological Sciences; Biological SciencesClockstaR: choosing the number of relaxed-clock models in molecular phylogenetic analysis, Bioinformatics, vol.30, 7, 2014,pp 1017-1019
2015Comment on "Phylogenomics resolves the timing and pattern of insect evolution"Duchene, Sebastian; Ho, Simon; Jun Tong, K; Lo, Nathan; Biological Sciences; Biological Sciences; Biological Sciences; Biological SciencesComment on "Phylogenomics resolves the timing and pattern of insect evolution", Science, vol.349, 6427, 2015,pp 487-487
2017Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral familiesDuchene, Sebastian; Geoghegan, Jemma Louise; Holmes, Edward; School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES)Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families, PLoS Pathogens, vol.13, 2, 2017,pp e1006215-N/A
2016Cross-validation to select Bayesian hierarchical models in phylogeneticsDi Giallonardo, Francesca; Duchene, David; Duchene, Sebastian; Eden, John-Sebastian; Geoghegan, Jemma Louise; Ho, Simon; Holmes, Edward; Holt, Kathryn E; Biological Sciences; Biological Sciences; Biological Sciences; Biological Sciences; Biological Sciences; School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES)Cross-validation to select Bayesian hierarchical models in phylogenetics, BMC Evolutionary Biology, vol.16, 1, 2016,pp 1-8
2016Cross-validation to select Bayesian hierarchical models in phylogeneticsDi Giallonardo, Francesca; Duchene, David; Duchene, Sebastian; Eden, John-Sebastian; Geoghegan, Jemma Louise; Ho, Simon; Holmes, Edward; Holt, Kathryn E; Biological Sciences; Biological Sciences; Biological Sciences; Biological Sciences; Biological Sciences; School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES)Cross-validation to select Bayesian hierarchical models in phylogenetics, BMC Evolutionary Biology, vol.16, 1, 2016,pp 1-8
2015Declining transition/transversion ratios through time reveal limitations to the accuracy of nucleotide substitution modelsDuchene, Sebastian; Ho, Simon; Holmes, Edward; Biological Sciences; Biological Sciences; Biological SciencesDeclining transition/transversion ratios through time reveal limitations to the accuracy of nucleotide substitution models, BMC Evolutionary Biology, vol.15, 1, 2015,pp 1-18
2016Estimating evolutionary rates using time-structured data: a general comparison of phylogenetic methodsDuchene, Sebastian; Geoghegan, Jemma Louise; Ho, Simon; Holmes, Edward; School of Biological Sciences; School of Biological Sciences; School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES)Estimating evolutionary rates using time-structured data: a general comparison of phylogenetic methods, Bioinformatics, vol.32, 22, 2016,pp 3375-3379
2016Estimating the number and assignment of clock models in analyses of multigene datasetsDuchene, Sebastian; Foster, Charles; Ho, Simon; Biological Sciences; Biological Sciences; School of Life and Environmental Sciences (SOLES)Estimating the number and assignment of clock models in analyses of multigene datasets, Bioinformatics, vol.32, 9, 2016,pp 1281-1285
2015Evaluating the adequacy of molecular clock models using posterior predictive simulationsDuchene, Sebastian; Ho, Simon; Holmes, Edward; Duchene, David A; Biological Sciences; Biological Sciences; Biological SciencesEvaluating the adequacy of molecular clock models using posterior predictive simulations, Molecular Biology and Evolution, vol.32, 11, 2015,pp 2986-2995
2016Evolution, Expression, and Function of Nonneuronal Ligand-Gated Chloride Channels in Drosophila melanogasterDuchene, Sebastian; Remnant, Emily; Batterham, Phillip; Chan, Janice; Daborn, Phillip J.; Lumb, Christopher; Perry, Trent; Williams, Adam; Yang, Ying; Biological Sciences; Biological SciencesEvolution, Expression, and Function of Nonneuronal Ligand-Gated Chloride Channels in Drosophila melanogaster, G3: Genes, Genomes, Genetics, vol.6, 7, 2016,pp 2003-2012
2016Evolution, Expression, and Function of Nonneuronal Ligand-Gated Chloride Channels in Drosophila melanogasterDuchene, Sebastian; Remnant, Emily; Batterham, Phillip; Chan, Janice; Daborn, Phillip J.; Lumb, Christopher; Perry, Trent; Williams, Adam; Yang, Ying; Biological Sciences; Biological SciencesEvolution, Expression, and Function of Nonneuronal Ligand-Gated Chloride Channels in Drosophila melanogaster, G3: Genes, Genomes, Genetics, vol.6, 7, 2016,pp 2003-2012
2016Genome-scale rates of evolutionary change in bacteriaDuchene, Sebastian; Fourment, Mathieu; Holmes, Edward; Edwards, David J; Hawkey, Jane; Holt, Kathryn E; Le Hello, Simon; Weill, Francois Xavier; School of Biological Sciences; School of Biological Sciences; School of Life and Environmental Sciences (SOLES)Genome-scale rates of evolutionary change in bacteria, Microbial Genomics, vol.2, 11, 2016,pp 1-12
2015Geographic and temporal dynamics of a global radiation and diversification in the killer whaleDuchene, Sebastian; Ho, Simon; Archer, Frederick; Avila-Arcos, Maria; Barrett-Lennard, Lance; Dalla Rosa, Luciano; Durban, John; Ellis, Graeme; et al, Various; Ferguson, Steven; Ford, John; Morin, Phillip A.; Parsons, Kim; Biological Sciences; Biological SciencesGeographic and temporal dynamics of a global radiation and diversification in the killer whale, Molecular Ecology, vol.24, 15, 2015,pp 3964-3979
2016Highly Divergent Dengue Virus Type 2 in Traveler Returning from Borneo to AustraliaDuchene, Sebastian; Holmes, Edward; Aaskov, John; Liu, Wenjun; Pickering, Paul; Biological Sciences; School of Life and Environmental Sciences (SOLES)Highly Divergent Dengue Virus Type 2 in Traveler Returning from Borneo to Australia, Emerging Infectious Diseases, vol.22, 12, 2016,pp 2146-2148
2014The impact of calibration and clock-model choice on molecular estimates of divergence timesDuchene, Sebastian; Ho, Simon; Lanfear, Robert; Biological Sciences; Biological SciencesThe impact of calibration and clock-model choice on molecular estimates of divergence times, Molecular Phylogenetics and Evolution, vol.78, 1, 2014,pp 277-289
2017The impacts of drift and selection on genomic evolution in insectsDuchene, Sebastian; Ho, Simon; Lo, Nathan; Tong, Kwei Jun; School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES); School of Life and Environmental Sciences (SOLES)The impacts of drift and selection on genomic evolution in insects, PeerJ, vol.5, 4, 2017,pp 1-16